View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10102_low_1 (Length: 621)

Name: NF10102_low_1
Description: NF10102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10102_low_1
NF10102_low_1
[»] chr5 (2 HSPs)
chr5 (275-613)||(30671028-30671365)
chr5 (46-140)||(16126404-16126498)
[»] chr4 (3 HSPs)
chr4 (275-613)||(34722309-34722637)
chr4 (275-613)||(19613606-19613935)
chr4 (275-373)||(44722578-44722677)
[»] chr1 (5 HSPs)
chr1 (275-613)||(22060346-22060683)
chr1 (277-613)||(25344167-25344492)
chr1 (277-354)||(25343835-25343912)
chr1 (277-353)||(25344003-25344079)
chr1 (277-354)||(25343661-25343738)
[»] chr8 (2 HSPs)
chr8 (275-613)||(11662600-11662923)
chr8 (278-613)||(24946309-24946633)
[»] chr6 (2 HSPs)
chr6 (275-457)||(12867429-12867613)
chr6 (275-354)||(9752814-9752894)
[»] chr7 (2 HSPs)
chr7 (275-400)||(7137209-7137330)
chr7 (313-373)||(43304349-43304409)
[»] chr3 (5 HSPs)
chr3 (521-611)||(18347635-18347725)
chr3 (275-394)||(18347396-18347511)
chr3 (278-439)||(19306023-19306167)
chr3 (335-389)||(5124401-5124455)
chr3 (46-139)||(1760953-1761045)


Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 275 - 613
Target Start/End: Original strand, 30671028 - 30671365
Alignment:
Q  275 ggatgtgtttgggccataaaaattaaaaccgaccggttcggttcggttttcggtttataacttaagaaccggaccgaaccaaactgaaccgcacttatta 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  30671028 ggatgtgtttgggccataaaaattaaaaccgaccggttcggttcggttttcggtttataacttaagaaccggaccgaaccaaaccgaaccacacttatta 30671127  T
Q  375 tattattactagactattctattacttaggccggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaa 474  Q
    || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30671128 tactgttactagactattctattacttaggccggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaa 30671227  T
Q  475 gtaccaagtaccaagagcgtgtttaattctttcttactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcattcactaatctacca 574  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30671228 gtaccaagtaccaagagcgtgtttaattctttcttact-cccaatgatgacttttgctattaaactgaaggaatcaaatggttcattcactaatctacca 30671326  T
Q  575 acactccaaacactaatctcctctcttctctccctttgc 613  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30671327 acactccaaacactaatctcctctcttctctccctttgc 30671365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 16126404 - 16126498
Alignment:
Q  46 ttaactcaaacatacaccgaaatctagacaacaacacctcactatctaaccacgggttactccaaaaacaagtattttcaccattaccaatttta 140  Q
    |||||||||||| || | ||||||||||   ||||||| ||| ||| ||||||| || | || ||||| |||| |||| ||||||||||||||||    
T  16126404 ttaactcaaacaaacgctgaaatctagatcgcaacaccccaccatccaaccacgagtcattctaaaaaaaagtgtttttaccattaccaatttta 16126498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 275 - 613
Target Start/End: Original strand, 34722309 - 34722637
Alignment:
Q  275 ggatgtgtttgggccataaaaattaaaaccgaccggttcggttcggttttcggtttataacttaagaaccggaccgaaccaaactgaaccgcacttatta 374  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||          |||||||||||    
T  34722309 ggatgtgtttggaccataaaaattataaccgaccggttcggttcggttttcggtttataacttaagaaccgaaccgaac----------cgcacttatta 34722398  T
Q  375 tattattactagactattctattacttaggccggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaa 474  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34722399 tattgttactagactattctattacttaggctggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaa 34722498  T
Q  475 gtaccaagtaccaagagcgtgtttaattctttcttactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcattcactaatctacca 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34722499 gtaccaagtaccaagagcgtgtttaattctttcttactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcagtcactaatctacca 34722598  T
Q  575 acactccaaacactaatctcctctcttctctccctttgc 613  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34722599 acactccaaacactaatctcctctcttctctccctttgc 34722637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 275 - 613
Target Start/End: Original strand, 19613606 - 19613935
Alignment:
Q  275 ggatgtgtttgggccataaaaattaaaaccgaccggttcggttcggttttcggtttataacttaagaaccggaccgaaccaaactgaaccgcacttatta 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19613606 ggatgtgtttgggccataaaaattaaaaccgaccggttcggttcgatttttggtttataacttaagaaccggaccgaaccaaaccgaaccgcacttatta 19613705  T
Q  375 tattattactagactattctattacttaggccggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaa 474  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||         |   ||||||||||||||||||||||||||||| ||||||||    
T  19613706 tattgttactagactattctattacttaggccggttttgtcagctgaaa---------tttgtctcatcagttaccaaagcaaactagccatctatcaaa 19613796  T
Q  475 gtaccaagtaccaagagcgtgtttaattctttcttactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcattcactaatctacca 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19613797 gtaccaagtaccaagagcgtgtttaattctttcttactccccaatgatggcttttgctattaaattgaaggaatcaaatggttcattcactaatctacca 19613896  T
Q  575 acactccaaacactaatctcctctcttctctccctttgc 613  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  19613897 acactccaaacactaatcccctctcttctctccctttgc 19613935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 275 - 373
Target Start/End: Complemental strand, 44722677 - 44722578
Alignment:
Q  275 ggatgtgtttgggccataaaaattaa-aaccgaccggttcggttcggttttcggtttataacttaagaaccggaccgaaccaaactgaaccgcacttatt 373  Q
    |||||||||||||||||   || ||| |||||||| |||||||||||||||||||| | ||||||| ||||||||||| || ||| ||||||||||||||    
T  44722677 ggatgtgtttgggccatctgaagtaagaaccgaccagttcggttcggttttcggttcacaacttaaaaaccggaccgagccgaaccgaaccgcacttatt 44722578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 275 - 613
Target Start/End: Original strand, 22060346 - 22060683
Alignment:
Q  275 ggatgtgtttgggccataaaaattaaaaccgaccggttcggttcg-----gttttcggtttataacttaagaaccggaccgaaccaaactgaaccgcact 369  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||     |||||||||||||||||||||||||  |||||||     |||||||||||    
T  22060346 ggatgtgtttgggccataaaaattaaaatcgaccagttcggttcgattcggttttcggtttataacttaagaaccaaaccgaac-----tgaaccgcact 22060440  T
Q  370 tattatattattactagactattctattacttaggccggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaacta 469  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22060441 tattatattgttactagactattctattacttaggctggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaacta 22060540  T
Q  470 tcaaagtaccaagtaccaagagcgtgtttaattctttcttactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcattcactaatc 569  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22060541 tcaaagtaccaagtaccaagagcgtgtttaattctttcttac-ccccaatgatgacttttgctattaaattgaaggaatcaaatggttcattcactaatc 22060639  T
Q  570 taccaacactccaaacactaatctcctctcttctctccctttgc 613  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  22060640 taccaacactccaaacactaatcccctctcttctctccctttgc 22060683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 277 - 613
Target Start/End: Original strand, 25344167 - 25344492
Alignment:
Q  277 atgtgtttgggccataaaaattaaaaccgaccggttcggttcggttttcggtttataacttaagaaccggaccgaaccaaactgaaccgcacttattata 376  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||               |||||||||||||||     
T  25344167 atgtgtttaggccataaaaattaaaaccgactggttcggttcggttttcggtttataacttaaaaaccg---------------aaccgcacttattatt 25344251  T
Q  377 ttattactagactattctattacttaggccggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaagt 476  Q
     | ||||||||| |||||||||||| |||||||||||||| || |||| ||||| ||| |||  ||||||| |||| ||||    | |||||| ||| ||    
T  25344252 ctgttactagac-attctattactttggccggttttgtcaacttaaactcttcaaatcactc--atcagttgccaaggcaa----gtcaactaacaa-gt 25344343  T
Q  477 accaagtaccaagagc--gtgtttaattctttcttactc-------cccaatgatgacttttgctattaaattgaaggaatcaaatggttcatt---cac 564  Q
    ||||||||||||||||  ||||||||||||||||| ||        |||| |||||||||||||||||||||||||||||||| ||| ||||||   |||    
T  25344344 accaagtaccaagagcacgtgtttaattctttctttctttcttactcccactgatgacttttgctattaaattgaaggaatcagatgattcattattcac 25344443  T
Q  565 taatctaccaacactccaaacactaatctcctctcttctctccctttgc 613  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25344444 taatctaccaacactccaaacactaatcacctctcttctctccctttgc 25344492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 277 - 354
Target Start/End: Original strand, 25343835 - 25343912
Alignment:
Q  277 atgtgtttgggccataaaaattaaaaccgaccggttcggttcggttttcggtttataacttaagaaccggaccgaacc 354  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||    
T  25343835 atgtgtttaggccataaaaattaaaaccgactggttcggttcggttttcggtttataacttaaaaaccgaaccgaacc 25343912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 277 - 353
Target Start/End: Original strand, 25344003 - 25344079
Alignment:
Q  277 atgtgtttgggccataaaaattaaaaccgaccggttcggttcggttttcggtttataacttaagaaccggaccgaac 353  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||    
T  25344003 atgtgtttaggccataaaaattaaaaccgactggttcggttcggttttcggtttataacttaaaaaccgaaccgaac 25344079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 277 - 354
Target Start/End: Original strand, 25343661 - 25343738
Alignment:
Q  277 atgtgtttgggccataaaaattaaaaccgaccggttcggttcggttttcggtttataacttaagaaccggaccgaacc 354  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||||||||    
T  25343661 atgtgtttaggccataaaaattaaaaccgactggttcggttcggttttcgatttataacttaaaaaccgaaccgaacc 25343738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 275 - 613
Target Start/End: Complemental strand, 11662923 - 11662600
Alignment:
Q  275 ggatgtgtttgggccataaaaattaaaaccgaccggttcggttcggttttcggtttataacttaagaaccggaccgaaccaaactgaaccgcacttatta 374  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||       ||||||||||| |||||||||||||||    
T  11662923 ggatgtgtttgggccataaaaattaaaatcgaccggttcggttcggtttttggtttataacttaagg------ccgaaccaaaccgaaccgcacttatta 11662830  T
Q  375 tattattactagactattctattacttaggccggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatcaaa 474  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||| ||||||||    
T  11662829 tattgttactagactattctattacttaggccggttttgtcagctgaaa---------tcgctctcatcagttaccaaagcaaactagccatctatcaaa 11662739  T
Q  475 gtaccaagtaccaagagcgtgtttaattctttcttactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcattcactaatctacca 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11662738 gtaccaagtaccaagagcgtgtttaattctttcttactccccaatgatgacttttgctattaaattgaaggaatcaaatggttcattcactaatctacca 11662639  T
Q  575 acactccaaacactaatctcctctcttctctccctttgc 613  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  11662638 acactccaaacactaatcccctctcttctctccctttgc 11662600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 278 - 613
Target Start/End: Original strand, 24946309 - 24946633
Alignment:
Q  278 tgtgtttgggccataaaaattaaaaccgaccggttcggttcggtt-----ttcggtttataacttaagaaccggaccgaaccaaactgaaccgcacttat 372  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||     || |||||||||||||| |||||     ||||||||     |||||||||    
T  24946309 tgtgtttgggccataaaaattaaaaccgactggttcggtttggttcgatttttggtttataacttaaaaaccg-----aaccaaac-----cgcacttat 24946398  T
Q  373 tatattattactagactattctattacttaggccggttttgtcagctgaaacccttcagatcgctctcatcagttaccaaagcaaactagccaactatca 472  Q
    |||| ||||||||||| |||||||||||| |||||||||||||| || |||| ||||| ||| |||  |||||||||||| ||||    |||||||| ||    
T  24946399 tatactattactagacgattctattactttggccggttttgtcaacttaaactcttcaaatcactc--atcagttaccaaggcaa----gccaactaaca 24946492  T
Q  473 aagtaccaagtaccaagagc--gtgtttaattctttcttactc---cccaatgatgacttttgctattaaattgaaggaatcaaatggttcatt---cac 564  Q
    |        ||| |||||||  ||||||||||||||||| ||    ||||||||||||||||||||||||||||||||||| | ||| ||||||   |||    
T  24946493 a--------gtatcaagagcatgtgtttaattctttctttcttactcccaatgatgacttttgctattaaattgaaggaataagatgattcattattcac 24946584  T
Q  565 taatctaccaacactccaaacactaatctcctctcttctctccctttgc 613  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24946585 taatctaccaacactccaaacactaatcacctctcttctctccctttgc 24946633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 275 - 457
Target Start/End: Complemental strand, 12867613 - 12867429
Alignment:
Q  275 ggatgtgtttgggccataaaaattaaaaccgaccggttcggttcggttttcggtttataacttaagaaccggaccgaaccaaactgaaccgcacttatta 374  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||| ||| ||| |||||||||||| ||    
T  12867613 ggatgtgtttggaccataaaaattaaaaccgaccggttcggttcggttttcgattaataacttaaaaaccggaccggaccgaaccgaaccgcacttacta 12867514  T
Q  375 tattattactagactattctattacttaggccggttttgtcagctgaaacccttcagatcgc---tctcatcagttaccaaagcaa 457  Q
    || | ||||||||| |||| ||||||| |||||||||||||| || |||| ||||| ||| |   |||||||||||||||| ||||    
T  12867513 tactgttactagac-attcaattactttggccggttttgtcaacttaaactcttcaaatccctcatctcatcagttaccaaggcaa 12867429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 9752814 - 9752894
Alignment:
Q  275 ggatgtgtttgggccataaa-aattaaaaccgaccggttcggttcggttttcggtttataacttaagaaccggaccgaacc 354  Q
    ||||||||||||| |||| | ||| ||||| |||| ||||||||||||||| ||||| | |||||  ||||||||| ||||    
T  9752814 ggatgtgtttgggtcatatataataaaaactgaccagttcggttcggtttttggttttttacttacaaaccggaccaaacc 9752894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 275 - 400
Target Start/End: Original strand, 7137209 - 7137330
Alignment:
Q  275 ggatgtgtttgggccataaaaattaaaa-ccgaccggttcggttcggttttcggtttataacttaagaaccggaccgaaccaaactgaaccgcacttatt 373  Q
    |||||||||||||||||| | ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||     ||||||||||||||    
T  7137209 ggatgtgtttgggccatatagattaaaaaccgactggttcggttcggttttcggtttataacttaagaaccggaccggacc-----gaaccgcacttatt 7137303  T
Q  374 atattattactagactattctattact 400  Q
     || | |||| ||||| ||||| ||||    
T  7137304 ttaatgttaccagactgttctactact 7137330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 43304349 - 43304409
Alignment:
Q  313 cggttcggttttcggtttataacttaagaaccggaccgaaccaaactgaaccgcacttatt 373  Q
    ||||||||||||||||| | ||||||| ||||||||||| || ||| || |||||||||||    
T  43304349 cggttcggttttcggttcacaacttaaaaaccggaccgagccgaaccgagccgcacttatt 43304409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 521 - 611
Target Start/End: Original strand, 18347635 - 18347725
Alignment:
Q  521 atgacttttgctattaaattgaaggaatcaaatggttcattcactaatctaccaacactccaaacactaatctcctctcttctctcccttt 611  Q
    ||||||||||||| |||||||||||||||| || |||||||   |||||||||| ||||||||||||||||| ||||||||||||||||||    
T  18347635 atgacttttgctactaaattgaaggaatcagatagttcatttcttaatctaccagcactccaaacactaatcacctctcttctctcccttt 18347725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 394
Target Start/End: Original strand, 18347396 - 18347511
Alignment:
Q  275 ggatgtgtttgggccataaaaattaaaa-ccgaccggttcggttcggttttcggtttataacttaagaaccggaccgaaccaaactgaaccgcacttatt 373  Q
    |||||||||||||||||| | ||||||| ||||||| || | || | |||| |||||||||||||||||||||||||||||     ||||| ||||||||    
T  18347396 ggatgtgtttgggccatatagattaaaaaccgaccgatttgatttgatttttggtttataacttaagaaccggaccgaacc-----gaaccacacttatt 18347490  T
Q  374 atattattactagactattct 394  Q
    ||| | |||||||||| ||||    
T  18347491 ataatgttactagactcttct 18347511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 439
Target Start/End: Original strand, 19306023 - 19306167
Alignment:
Q  278 tgtgtttgggccataaaaattaaaaccgaccggttcggttcggttttcggtttataacttaagaaccggaccgaaccaaactgaaccgcacttattatat 377  Q
    ||||||||||||||||||||||||||||||||||||| ||            ||||| |||| ||| ||| ||||||     |||||||||||||||||     
T  19306023 tgtgtttgggccataaaaattaaaaccgaccggttcgatt------------tataatttaaaaactggatcgaacc-----gaaccgcacttattatac 19306105  T
Q  378 tattactagactattctattacttaggccggttttgtcagctgaaacccttcagatcgctct 439  Q
    | ||||||||| |||||||||||| |||||||||||||| || |||| ||||| ||| ||||    
T  19306106 tgttactagacgattctattactttggccggttttgtcaacttaaactcttcaaatcactct 19306167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 5124401 - 5124455
Alignment:
Q  335 cttaagaaccggaccgaaccaaactgaaccgcacttattatattattactagact 389  Q
    ||||||||| |||| ||||||||| ||||||||||||||||| | ||||||||||    
T  5124401 cttaagaactggactgaaccaaaccgaaccgcacttattataatgttactagact 5124455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 1761045 - 1760953
Alignment:
Q  46 ttaactcaaacatacaccgaaatctagacaacaacacctcactatctaaccacgggttactccaaaaacaagtattttcaccattaccaatttt 139  Q
    |||||||||| | || |||||||||||||  ||||||| |||| || | ||||||||  ||||||| |  ||| ||||||||||||||||||||    
T  1761045 ttaactcaaatagacgccgaaatctagacctcaacaccccactttccagccacgggtccctccaaata-gagtgttttcaccattaccaatttt 1760953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University