View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10102_low_10 (Length: 362)
Name: NF10102_low_10
Description: NF10102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10102_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 44598180 - 44597826
Alignment:
| Q |
1 |
tcaatcacagcttttggtcaccatgcttttttcctctgtttcaatgattagttggtggccatgtcaggtgctcatcaggatgcttcccagttactatcaa |
100 |
Q |
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| T |
44598180 |
tcaatcacagcttttggtcaccatgcttttttcctctgtttcattgattagttggtggccatgtcaggtgctcatcaggatgcttcctagttactatcaa |
44598081 |
T |
|
| Q |
101 |
catgtttctcagtacaagaactcgttggttacgaaattcctgggagttcattgtgtcaaacctattggaggacaaaaggtatggactacctaatttaaat |
200 |
Q |
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| T |
44598080 |
catgtttctcagtacaagaactcgttggttacgaaattcctaggagttcattgtgtcaaacctattggaggacaaaaggtatggactacctaatttaaat |
44597981 |
T |
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| Q |
201 |
tttgcactgaactgatgtgctatatgaatgttagtaataatataaatgaatacttgtattgctatggaaaaacagactcgatttattgtaatgggcaatg |
300 |
Q |
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| T |
44597980 |
tttgcactgaactgatgtactatatgaatgcttgtaataatataaacgaatacttgtattgctatggaaaaacagactcgatttattgtaatgggcaatg |
44597881 |
T |
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| Q |
301 |
tgttttgttcggagtatcgaattcataagcgatttgacctcaaaggttcatctca |
355 |
Q |
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| T |
44597880 |
tgttttgttcggagtatcgaattcataagcgatttgacctcaaaggttcatctca |
44597826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 268 - 355
Target Start/End: Complemental strand, 39806097 - 39806010
Alignment:
| Q |
268 |
aaaaacagactcgatttattgtaatgggcaatgtgttttgttcggagtatcgaattcataagcgatttgacctcaaaggttcatctca |
355 |
Q |
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| T |
39806097 |
aaaaacagattcggtttattgtgatgggcaatgtgttttgttcggagtatcgaatccataaaaggtttgatctcaaaggttcttctca |
39806010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 184
Target Start/End: Complemental strand, 39806314 - 39806192
Alignment:
| Q |
62 |
tgtcaggtgctcatcaggatgcttcccagttactatcaacatgtttctcagtacaagaactcgttggttacgaaattcctgggagttcattgtgtcaaac |
161 |
Q |
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| T |
39806314 |
tgtcaggtgcttatcagaatgcttccacgttactaccaacatgtttgtcaatacaagaactctttggtaactgcattcttaggggcacattgtatcaaac |
39806215 |
T |
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| Q |
162 |
ctattggaggacaaaaggtatgg |
184 |
Q |
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| T |
39806214 |
ctgttggaggtcaaaaggtatgg |
39806192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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