View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10102_low_12 (Length: 344)

Name: NF10102_low_12
Description: NF10102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10102_low_12
NF10102_low_12
[»] chr8 (12 HSPs)
chr8 (1-328)||(14727568-14727891)
chr8 (181-326)||(15329839-15329984)
chr8 (181-326)||(15510208-15510353)
chr8 (181-326)||(28865933-28866078)
chr8 (145-311)||(28693133-28693300)
chr8 (146-328)||(30648837-30649019)
chr8 (217-328)||(29552811-29552922)
chr8 (151-328)||(26089184-26089364)
chr8 (151-287)||(27714299-27714435)
chr8 (210-290)||(26090238-26090318)
chr8 (1-53)||(26089068-26089120)
chr8 (1-62)||(28865769-28865830)
[»] chr1 (2 HSPs)
chr1 (132-328)||(26086364-26086563)
chr1 (1-63)||(26086619-26086681)
[»] chr7 (2 HSPs)
chr7 (165-307)||(6610854-6610999)
chr7 (152-327)||(17292587-17292762)
[»] chr3 (1 HSPs)
chr3 (146-293)||(4819862-4820009)


Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 14727568 - 14727891
Alignment:
Q  1 tattattaagtgttggagcaaaacatagcatagaagtcgctgatgctcccacacgtgcacatacatagtttgaggttaatggtcacaaccaaaactatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | ||||||||||||| |||||||||||||||||    
T  14727568 tattattaagtgttggagcaaaacatagcatagaagtcgctgatgctcccacacgtgcacata----ggttgaggttaatggccacaaccaaaactatga 14727663  T
Q  101 gtaataaattggtaactgagataactcgcactagaagtgacatgacagaagagcaacgcagcatttggttgataatcgccactcttgttgcaactgccat 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||    
T  14727664 gtaataaattggtatctgagataactcgcactagaagtgacatgacagaagagcaacgcaacatttggttgatagtcgccactcttattgcaactgccat 14727763  T
Q  201 gtaccaaccagctttgagtccccctggtggagtttatcagattagtgctggtgacaataatttgaacatcacttcctcatattctactatttccacccca 300  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  14727764 gtaccaatcagttttgagtccccctggtggagtttatcagattagtgctggtgacaataatttgaacatcacttcctccaattctactatttccacccca 14727863  T
Q  301 gaaaatgttggaagatctgtcttgtcag 328  Q
     |||||||||||||||||||||||||||    
T  14727864 aaaaatgttggaagatctgtcttgtcag 14727891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 181 - 326
Target Start/End: Original strand, 15329839 - 15329984
Alignment:
Q  181 actcttgttgcaactgccatgtaccaaccagctttgagtccccctggtggagtttatcagattagtgctggtgacaataatttgaacatcacttcctcat 280  Q
    |||||| |||||||| |||||||| || || || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||      
T  15329839 actcttattgcaactaccatgtacgaatcaactctgagtccccctggtggagtttatcagattagtgctgatgacaataatttgaacatcacttcctcca 15329938  T
Q  281 attctactatttccaccccagaaaatgttggaagatctgtcttgtc 326  Q
    ||||||||||||| |||| | |||||||||| | |||| |||||||    
T  15329939 attctactatttctaccctaaaaaatgttgggaaatctatcttgtc 15329984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 181 - 326
Target Start/End: Original strand, 15510208 - 15510353
Alignment:
Q  181 actcttgttgcaactgccatgtaccaaccagctttgagtccccctggtggagtttatcagattagtgctggtgacaataatttgaacatcacttcctcat 280  Q
    |||||| |||||||| |||||||| || || || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||      
T  15510208 actcttattgcaactaccatgtacgaatcaactctgagtccccctggtggagtttatcagattagtgctgatgacaataatttgaacatcacttcctcca 15510307  T
Q  281 attctactatttccaccccagaaaatgttggaagatctgtcttgtc 326  Q
    ||||||||||||| |||| | |||||||||| | |||| |||||||    
T  15510308 attctactatttctaccctaaaaaatgttgggaaatctatcttgtc 15510353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 181 - 326
Target Start/End: Original strand, 28865933 - 28866078
Alignment:
Q  181 actcttgttgcaactgccatgtaccaaccagctttgagtccccctggtggagtttatcagattagtgctggtgacaataatttgaacatcacttcctcat 280  Q
    |||||| |||||||| |||||| | || || || ||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||      
T  28865933 actcttattgcaactaccatgttcgaatcaactctgagtccccctggtggattttatcagattagttctgatgacaataatttgaacatcacttcctcca 28866032  T
Q  281 attctactatttccaccccagaaaatgttggaagatctgtcttgtc 326  Q
    ||||||||||||| |||| | |||||||||| | ||||||||||||    
T  28866033 attctactatttctaccctaaaaaatgttgggaaatctgtcttgtc 28866078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 145 - 311
Target Start/End: Complemental strand, 28693300 - 28693133
Alignment:
Q  145 acagaagagcaacgcagcatttggttgataatcgccactcttgttgcaactgccatgtaccaaccagctttgagtccccctggtggagtttatcagatt- 243  Q
    ||||| || ||||||| ||||||||| ||| |||| |||||| |||||||| ||||||   || ||||| |||  |||||||||||| |||||||||||     
T  28693300 acagaggatcaacgcaacatttggttaatagtcgcgactcttattgcaactaccatgtttgaatcagctctgacaccccctggtggaatttatcagattt 28693201  T
Q  244 agtgctggtgacaataatttgaacatcacttcctcatattctactatttccaccccagaaaatgttgg 311  Q
    ||||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||| |||||||||    
T  28693200 agtgctggtgacagtaatttgaacatcacttcctcaaactctactatttctaccccagcaaatgttgg 28693133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 146 - 328
Target Start/End: Original strand, 30648837 - 30649019
Alignment:
Q  146 cagaagagcaacgcagcatttggttgataatcgccactcttgttgcaactgccatgtaccaaccagctttgagtccccctggtggagtttatcagattag 245  Q
    |||| |||||||| | || |||||||||| | || ||||||||||| |||||||| || ||| |||  |||||||||||||||||| |||||||| ||||    
T  30648837 cagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttag 30648936  T
Q  246 tgctggtgacaataatttgaacatcacttcctcatattctactatttccaccccagaaaatgttggaagatctgtcttgtcag 328  Q
    ||||||||||| |||   |||||||||||||||  ||| ||| |||||  |||||| ||||| ||| | ||| ||||||||||    
T  30648937 tgctggtgacactaacacgaacatcacttcctccaattttaccatttctgccccaggaaatgctgggaaatcagtcttgtcag 30649019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 217 - 328
Target Start/End: Original strand, 29552811 - 29552922
Alignment:
Q  217 agtccccctggtggagtttatcagattagtgctggtgacaataatttgaacatcacttcctcatattctactatttccaccccagaaaatgttggaagat 316  Q
    |||||||||||||||||||||||| ||| |||| ||||||| ||||||||||||||||||||  ||||||||||||| |||| || ||||| ||||| ||    
T  29552811 agtccccctggtggagtttatcaggttaatgctagtgacaaaaatttgaacatcacttcctccaattctactatttctaccctaggaaatgctggaaaat 29552910  T
Q  317 ctgtcttgtcag 328  Q
    | ||| ||||||    
T  29552911 cggtcatgtcag 29552922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 328
Target Start/End: Original strand, 26089184 - 26089364
Alignment:
Q  151 gagcaacgcagcatttggttgataatcgccactcttgttgcaactgccatgtaccaaccagctttgagtccccctggtggagtttatcagattagtgctg 250  Q
    |||||||| | || |||||||||| | || ||||||||||||||||| || || ||| |||  |||||||||||| ||||| |||||||| ||||||||     
T  26089184 gagcaacgtaacagttggttgatagttgcgactcttgttgcaactgcgatttatcaatcaggattgagtccccctagtggaatttatcaggttagtgcta 26089283  T
Q  251 gtga---caataatttgaacatcacttcctcatattctactatttccaccccagaaaatgttggaagatctgtcttgtcag 328  Q
    ||||   ||||  | ||||||||||||||||  ||||||||||||| || |||| ||||| ||| | |||||| |||||||    
T  26089284 gtgatggcaatggtgtgaacatcacttcctccaattctactatttctactccaggaaatgctgggaaatctgttttgtcag 26089364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 287
Target Start/End: Original strand, 27714299 - 27714435
Alignment:
Q  151 gagcaacgcagcatttggttgataatcgccactcttgttgcaactgccatgtaccaaccagctttgagtccccctggtggagtttatcagattagtgctg 250  Q
    |||||||||| || |||| ||||| | || |||||||||||||| |||||||| ||| |||| |||| ||||  |||||||||||||||| ||| ||||     
T  27714299 gagcaacgcaacacttggatgatagttgcgactcttgttgcaacagccatgtatcaatcagcattgactcccgttggtggagtttatcaggttaatgcta 27714398  T
Q  251 gtgacaataatttgaacatcacttcctcatattctac 287  Q
    ||||||||||| | ||||| ||||||||  |||||||    
T  27714399 gtgacaataatgtcaacattacttcctctaattctac 27714435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 210 - 290
Target Start/End: Original strand, 26090238 - 26090318
Alignment:
Q  210 agctttgagtccccctggtggagtttatcagattagtgctggtgacaataatttgaacatcacttcctcatattctactat 290  Q
    |||||||| ||||| ||||||||||||||||||||| | |||||||||||||| ||||||||||||||   ||||||||||    
T  26090238 agctttgactccccatggtggagtttatcagattagggttggtgacaataattggaacatcacttccttcaattctactat 26090318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26089068 - 26089120
Alignment:
Q  1 tattattaagtgttggagcaaaacatagcatagaagtcgctgatgctcccaca 53  Q
    ||||||||||| |||||||||||| |||||||||| || ||||||||||||||    
T  26089068 tattattaagttttggagcaaaacctagcatagaaatcactgatgctcccaca 26089120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 28865769 - 28865830
Alignment:
Q  1 tattattaagtgttggagcaaaacatagcatagaagtcgctgatgctcccacacgtgcacat 62  Q
    ||||||| |||| |||| ||||||  ||| |||||||| | |||||||||||||||||||||    
T  28865769 tattattcagtgctggatcaaaaccaagcttagaagtcacagatgctcccacacgtgcacat 28865830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 132 - 328
Target Start/End: Complemental strand, 26086563 - 26086364
Alignment:
Q  132 tagaagtgacatgacagaagagcaacgcagcatttggttgataatcgccactcttgttgcaactgccatgtaccaaccagctttgagtccccctggtgga 231  Q
    |||||||||||||||||| |||||||||| ||||||||| ||| ||||  ||||| |||| ||| |||||||  || ||||| ||| |||||||||||||    
T  26086563 tagaagtgacatgacagaggagcaacgcaacatttggttaatagtcgcagctcttattgcgactaccatgtatgaatcagctctgactccccctggtgga 26086464  T
Q  232 gtttatcagattagtgctggtgacaataatttgaacatcacttcctcatattctactatttc---caccccagaaaatgttggaagatctgtcttgtcag 328  Q
    ||||||| || |||||| |||||||||| ||||||||||||||||||  |||||||||||||    |||| || ||||||||| | ||||||||||||||    
T  26086463 gtttatccgagtagtgccggtgacaatagtttgaacatcacttcctccaattctactatttctagtacccaaggaaatgttgggaaatctgtcttgtcag 26086364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26086681 - 26086619
Alignment:
Q  1 tattattaagtgttggagcaaaacatagcatagaagtcgctgatgctcccacacgtgcacata 63  Q
    |||||||||| |  |||||||||  |||||| |||||||||||||||||||||| ||||||||    
T  26086681 tattattaagggcaggagcaaaatctagcatggaagtcgctgatgctcccacacttgcacata 26086619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 307
Target Start/End: Complemental strand, 6610999 - 6610854
Alignment:
Q  165 ttggttgataatcgccactcttgttgcaactgccatgtaccaaccagctttgagtccccctggtggagtttatcagattagtgctgg---tgacaataat 261  Q
    |||||||||||| || ||||| |||||||||||||| || ||| |||  |||||||| ||||||||| |||||||| |||||| |||   |||||||  |    
T  6610999 ttggttgataattgcgactctcgttgcaactgccatctatcaatcaggattgagtcctcctggtggaatttatcaggttagtgttggtgatgacaatggt 6610900  T
Q  262 ttgaacatcacttcctcatattctactatttccaccccagaaaatg 307  Q
     ||||||||||||||||| ||||||||||||| || ||||||||||    
T  6610899 gtgaacatcacttcctcaaattctactatttctactccagaaaatg 6610854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 152 - 327
Target Start/End: Complemental strand, 17292762 - 17292587
Alignment:
Q  152 agcaacgcagcatttggttgataatcgccactcttgttgcaactgccatgtaccaaccagctttgagtccccctggtggagtttatcagattagtgctgg 251  Q
    ||||||||| || |||||||||||| || |||||||||||||| ||||  || ||| || |  | | ||||  |||||| ||||||||| ||||| || |    
T  17292762 agcaacgcaacacttggttgataattgcgactcttgttgcaacagccacctatcaatcaacgctaactcccgttggtggtgtttatcaggttagtactag 17292663  T
Q  252 tgacaataatttgaacatcacttcctcatattctactatttccaccccagaaaatgttggaagatctgtcttgtca 327  Q
    |||||||||| |||||| ||||||||   ||||||| ||||| |||||| |||||||||| | ||| |||||||||    
T  17292662 tgacaataatgtgaacaacacttccttcaattctacaatttctaccccaaaaaatgttgggaaatcggtcttgtca 17292587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 293
Target Start/End: Original strand, 4819862 - 4820009
Alignment:
Q  146 cagaagagcaacgcagcatttggttgataatcgccactcttgttgcaactgccatgtaccaaccagctttgagtccccctggtggagtttatcagattag 245  Q
    |||| |||||||||| || |||||||||| | || |||||||||||||||||||  |  ||| ||||  ||  ||| || ||||||||||||||| |||     
T  4819862 cagaggagcaacgcaacacttggttgatagttgcgactcttgttgcaactgccacctttcaatcagcaatgtctccaccaggtggagtttatcaggttaa 4819961  T
Q  246 tgctggtgacaataatttgaacatcacttcctcatattctactatttc 293  Q
    |||| |||||| || |||||||||||| ||| |  |||||||||||||    
T  4819962 tgctagtgacagtagtttgaacatcacgtccaccaattctactatttc 4820009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University