View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10102_low_13 (Length: 336)
Name: NF10102_low_13
Description: NF10102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10102_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 171 - 321
Target Start/End: Complemental strand, 54978359 - 54978209
Alignment:
| Q |
171 |
acatatcttgaaatcacactcacaaggaagaatatcaaaaccgcattcatcacgcatcaattcagagtcacaaccccaaatagcacatctagaacttttt |
270 |
Q |
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| T |
54978359 |
acatatcttgaaatcacactcacaaggaagaatatcaaaaccgcattcatcacgcatcaattcagagtcacaaccccaaatagcacatctagaacttttt |
54978260 |
T |
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| Q |
271 |
gccccggccatatgtggatgcttgtccaaaccgttactcaactttctacgc |
321 |
Q |
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| T |
54978259 |
gccccggccatatgtggatggttgtccaaaccgttactcaactttctacgc |
54978209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 54979709 - 54979585
Alignment:
| Q |
18 |
aatgttgtatcaaaatgttgggctttttcttgtgtctcacgtcatctatcaatgtactctttaaaatacagaaatatgcacaaatatgttgatcctataa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54979709 |
aatgttgtatcaaaatgttgggctttttcttgtgtctcacgtcatctatcaatgtactctttaaaatacagaaatatgcacaaatatgttgatcctataa |
54979610 |
T |
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| Q |
118 |
aggaattctatggaagttatgacag |
142 |
Q |
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| T |
54979609 |
aggaattctatggaagttatgacag |
54979585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 54971290 - 54971193
Alignment:
| Q |
18 |
aatgttgtatcaaaatgttgggctttttcttgtgtctcacgtcatctatcaatgtactctttaaaatacagaaatatgcacaaatatgttgatcctat |
115 |
Q |
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| T |
54971290 |
aatgttgtatcaaaatgttaggttttttcttgtggctcacgtcatctatcaatgtactctttaaaatacagaaatatgcacaaatatgttgatcctat |
54971193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 12195887 - 12195939
Alignment:
| Q |
170 |
tacatatcttgaaatcacactcacaaggaagaatatcaaaaccgcattcatca |
222 |
Q |
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|||| |||||||||||||||||||||||||| || || ||||| | ||||||| |
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| T |
12195887 |
tacaaatcttgaaatcacactcacaaggaagtatttccaaacctctttcatca |
12195939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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