View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10102_low_2 (Length: 541)
Name: NF10102_low_2
Description: NF10102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10102_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 19 - 525
Target Start/End: Original strand, 31959602 - 31960108
Alignment:
| Q |
19 |
cagagaccacaagcagaacaattctccgagcaagaacccatcaaatatggtgacgttttcaacgtctctggtgaattagcctcacaaccaatcaaaccaa |
118 |
Q |
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| T |
31959602 |
cagagaccacaagcagagcaattctccgagcaagaacccatcaaatatggtgacgttttcaacgtctctggtgaattagcctcacaaccaatcaaaccaa |
31959701 |
T |
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| Q |
119 |
gagacgcagctctcatgcaagccacagagaatcaagccctaggacaaacccaaaagggcagtccagcctccgtgatgcaatcagcagctgcagtaaacac |
218 |
Q |
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| T |
31959702 |
gagacgcagctctcatgcaagccacagagaatcaagccctaggacaaacccaaaagggcagtccagcctccgtgatgcaatcagcagctgcagtaaacac |
31959801 |
T |
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| Q |
219 |
cgctgccggcctcgtaagccacgaagacatctcagacatagcaaaaaaccaaggcatgagtgtctccaaaaccaaagtgggtgcaaaccgtgtgatcaca |
318 |
Q |
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| T |
31959802 |
cgctgccggcctcgtaagccacggagacatctcagacatagcaaaaaaccaaggcatgagtgtctccaaaaccaaagtgggtgcaaaccgtgtgatcaca |
31959901 |
T |
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| Q |
319 |
gaatctgttggatcacaagttgttggacagtttgttgaacctgatgtgcctatgaatgatcctggtttggttttggacaagaatgctataaccattggag |
418 |
Q |
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| T |
31959902 |
gaatctgttggatcacaagttgttggacagtttgttgaacctgatgtgcctatgaatgatcctggtttggttttggacaagaatgctataaccattggag |
31960001 |
T |
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| Q |
419 |
aggcactggaagcttctgctttgagtcaagccggtgataagccattggatcagagtgatgctgctgctatacaggccgcggaaatgagagctaccggaaa |
518 |
Q |
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| T |
31960002 |
aggcactggaagcttctgctttgagtcaagccggtgataagccgttggatcagagtgatgctgctgctatacaggccgcggaaatgagagctaccggaaa |
31960101 |
T |
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| Q |
519 |
gaatcat |
525 |
Q |
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| T |
31960102 |
gaatcat |
31960108 |
T |
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Back To:
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 11248075 - 11248026
Alignment:
| Q |
49 |
caagaacccatcaaatatggtgacgttttcaacgtctctggtgaattagc |
98 |
Q |
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| T |
11248075 |
caagaacccatcaaatacggtgaagttttcaatgtctccggtgacttagc |
11248026 |
T |
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