View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10102_low_21 (Length: 257)

Name: NF10102_low_21
Description: NF10102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10102_low_21
NF10102_low_21
[»] chr3 (2 HSPs)
chr3 (1-239)||(32992406-32992644)
chr3 (51-239)||(46910791-46910979)
[»] chr7 (2 HSPs)
chr7 (51-239)||(45753459-45753647)
chr7 (151-237)||(6204704-6204790)
[»] chr8 (2 HSPs)
chr8 (51-239)||(40537151-40537339)
chr8 (151-198)||(43690942-43690989)
[»] chr2 (3 HSPs)
chr2 (91-236)||(42161842-42161987)
chr2 (162-237)||(27890473-27890548)
chr2 (151-236)||(34568584-34568669)
[»] chr6 (1 HSPs)
chr6 (130-236)||(26207824-26207930)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 32992406 - 32992644
Alignment:
Q  1 atacaaatagaagaagaagaaagacaaatatgatacaaatagaattcaaagagaggaactagtacgcatcaattcaaagttaagagttcttacaatttgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  32992406 atacaaatagaagaagaagaaagacaaatatgatacaaatagaattcaaagagaggaactagtacgcatcaattcaaaattaagagttcttacaatttac 32992505  T
Q  101 ttgtttaggaccaatcaattgtggattgtgattggaaaatgctttggggatggaggggaccgcatcgtattcaaactttcatgtggttagttgctcatgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  32992506 ttgtttaggaccaatcaattgtggattgtgattggaaaatgctttggggatggaggggaccgcatcgtattcaaacttttatgtggttagttgcacatgg 32992605  T
Q  201 tcgtattcttacaaactatcgtcgtagtaggtggggtac 239  Q
    | |||||||||||||||||||||||||||||||||||||    
T  32992606 ttgtattcttacaaactatcgtcgtagtaggtggggtac 32992644  T

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Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 51 - 239
Target Start/End: Original strand, 46910791 - 46910979
Alignment:
Q  51 gagaggaactagtacgcatcaattcaaagttaagagttcttacaatttgcttgtttaggaccaatcaattgtggattgtgattggaaaatgctttgggga 150  Q
    |||||||||||||||||||||||||| |||||| | | ||||||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||||    
T  46910791 gagaggaactagtacgcatcaattcacagttaatattgcttacaatttgcttgttcatgaccaatccattgtggatggtgattggaaaatgctttgggga 46910890  T
Q  151 tggaggggaccgcatcgtattcaaactttcatgtggttagttgctcatggtcgtattcttacaaactatcgtcgtagtaggtggggtac 239  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| |||||||||    
T  46910891 tggagggggccacatcgtattcaaactttcatgtggttagttgctcatggttgtattcttacaaactaccatcgtagtaagtggggtac 46910979  T

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Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 51 - 239
Target Start/End: Complemental strand, 45753647 - 45753459
Alignment:
Q  51 gagaggaactagtacgcatcaattcaaagttaagagttcttacaatttgcttgtttaggaccaatcaattgtggattgtgattggaaaatgctttgggga 150  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||  ||||||||| | ||||||| ||||||||||||||||||||| |    
T  45753647 gagaggaactagtacgcatcaattcatagttaagagtgcttacaatttgcttgttcgggaccaatcgactgtggatggtgattggaaaatgctttgggaa 45753548  T
Q  151 tggaggggaccgcatcgtattcaaactttcatgtggttagttgctcatggtcgtattcttacaaactatcgtcgtagtaggtggggtac 239  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  45753547 tggaggggaccacatcgtattcaaactttcatgtggttagtagctcatggtcgtattcttacaaactaccgtcgtagtaggtggggtac 45753459  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 6204704 - 6204790
Alignment:
Q  151 tggaggggaccgcatcgtattcaaactttcatgtggttagttgctcatggtcgtattcttacaaactatcgtcgtagtaggtggggt 237  Q
    |||| ||| ||||| ||||||||||| ||||| ||||| |||||||||| ||| ||| |||| || || ||||| ||||| ||||||    
T  6204704 tggaagggtccgcaacgtattcaaaccttcatttggttggttgctcatgatcgcatttttactaattaccgtcgaagtagatggggt 6204790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 51 - 239
Target Start/End: Complemental strand, 40537339 - 40537151
Alignment:
Q  51 gagaggaactagtacgcatcaattcaaagttaagagttcttacaatttgcttgtttaggaccaatcaattgtggattgtgattggaaaatgctttgggga 150  Q
    |||||||||||||||||||||||||| | ||||||||   |||||||| |||||| |||||||||| ||||||||| |||||||||||||||||| ||||    
T  40537339 gagaggaactagtacgcatcaattcacaattaagagtgtctacaattttcttgttcaggaccaatctattgtggatggtgattggaaaatgctttaggga 40537240  T
Q  151 tggaggggaccgcatcgtattcaaactttcatgtggttagttgctcatggtcgtattcttacaaactatcgtcgtagtaggtggggtac 239  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40537239 tggaggggaccacatcgtaatcaaactttcatgtggttagttgctcatggtcgtattcttacaaaccatcgtcgtagtaggtggggtac 40537151  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 43690942 - 43690989
Alignment:
Q  151 tggaggggaccgcatcgtattcaaactttcatgtggttagttgctcat 198  Q
    ||||||||| | |||| |||||||||||| ||||||||||||||||||    
T  43690942 tggaggggatcacatcatattcaaactttaatgtggttagttgctcat 43690989  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 91 - 236
Target Start/End: Complemental strand, 42161987 - 42161842
Alignment:
Q  91 tacaatttgcttgtttaggaccaatcaattgtggattgtgattggaaaatgctttggggatggaggggaccgcatcgtattcaaactttcatgtggttag 190  Q
    |||||||||||| |||   ||||||| | ||||||  | ||||||||| | |||||| |||||||||| || |||| |||||||| ||||||||||||||    
T  42161987 tacaatttgcttctttgtaaccaatccaatgtggagggggattggaaagttctttggagatggaggggtcctcatcttattcaaattttcatgtggttag 42161888  T
Q  191 ttgctcatggtcgtattcttacaaactatcgtcgtagtaggtgggg 236  Q
    | |||||||||||||||||||| ||||| ||||| |||||||||||    
T  42161887 tggctcatggtcgtattcttactaactaccgtcgaagtaggtgggg 42161842  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 27890548 - 27890473
Alignment:
Q  162 gcatcgtattcaaactttcatgtggttagttgctcatggtcgtattcttacaaactatcgtcgtagtaggtggggt 237  Q
    |||||||||||||||||||||||||||||| ||   |||||||||||| || || |||| ||||||||||||||||    
T  27890548 gcatcgtattcaaactttcatgtggttagtggcatgtggtcgtattctcactaattatcatcgtagtaggtggggt 27890473  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 34568584 - 34568669
Alignment:
Q  151 tggaggggaccgcatcgtattcaaactttcatgtggttagttgctcatggtcgtattcttacaaactatcgtcgtagtaggtgggg 236  Q
    ||||||||| | |||||||| ||| ||||||| ||||| || ||||||| ||||||| | ||||| || || || |||||||||||    
T  34568584 tggaggggaacacatcgtatccaatctttcatctggttggtagctcatgatcgtattttaacaaattaccgccgaagtaggtgggg 34568669  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 26207824 - 26207930
Alignment:
Q  130 gattggaaaatgctttggggatggaggggaccgcatcgtattcaaactttcatgtggttagttgctcatggtcgtattcttacaaactatcgtcgtagta 229  Q
    ||||||||||| |||||| | ||||  || || ||||||||||||| ||||||||||||||| || || ||||||||||| || ||||||||||||||||    
T  26207824 gattggaaaatcctttggagttggaaaggtccacatcgtattcaaattttcatgtggttagtggcacacggtcgtattctcactaactatcgtcgtagta 26207923  T
Q  230 ggtgggg 236  Q
    |||||||    
T  26207924 ggtgggg 26207930  T

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