View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10102_low_24 (Length: 244)
Name: NF10102_low_24
Description: NF10102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10102_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 45106804 - 45106583
Alignment:
| Q |
17 |
atgatccttcaaggaaatatgctggctaccaaaagaggaacatattcagtttgaaacccgactcagaactgaagatactagtttgcattcataaaccaca |
116 |
Q |
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| T |
45106804 |
atgatccttcaaggaaatatgctggctaccaaaagaggaacatattcagtttgaaacccgactcagaactgaagatactagtttgcattcataaaccaca |
45106705 |
T |
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| Q |
117 |
ccacataactcctatgactgaagtaattgatctatgtgaccctatagtagaatatcctgtcaccgtagatgccttgcatttaatcgagttagccggaagg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45106704 |
ccacataactcctatgactgaagtaattgatctatgtgaccctatagtagaatatcctgtcaccgtagatgccttgcatttaatcgagttagccggaagg |
45106605 |
T |
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| Q |
217 |
gcttcacccattttcatctctc |
238 |
Q |
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||||||||||||||||| |||| |
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| T |
45106604 |
gcttcacccattttcatttctc |
45106583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 5623488 - 5623559
Alignment:
| Q |
17 |
atgatccttcaaggaaatatgctggctaccaaaagaggaacatattcagtttgaaacccgactcagaactga |
88 |
Q |
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| T |
5623488 |
atgatccatcaagaaaatatgccggctaccaaaaaaggaacatcatgagtttaaaacccgacgcagaactga |
5623559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 18602409 - 18602485
Alignment:
| Q |
17 |
atgatccttcaaggaaatatgctggctaccaaaagaggaacatattcagtttgaaacccgactcagaactgaagata |
93 |
Q |
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| T |
18602409 |
atgacccttcaaggaaatatgcaggttatcaaaagcgtaacatcttgagcttgaaaccaaactcagaacttaagata |
18602485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 18630217 - 18630141
Alignment:
| Q |
17 |
atgatccttcaaggaaatatgctggctaccaaaagaggaacatattcagtttgaaacccgactcagaactgaagata |
93 |
Q |
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|||| ||||||||||||||||| || || |||||| | ||||| || || |||||||| |||||||||| |||||| |
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| T |
18630217 |
atgacccttcaaggaaatatgcaggttatcaaaagcgtaacatcttgagcttgaaaccaaactcagaacttaagata |
18630141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 18642925 - 18642849
Alignment:
| Q |
17 |
atgatccttcaaggaaatatgctggctaccaaaagaggaacatattcagtttgaaacccgactcagaactgaagata |
93 |
Q |
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|||| ||||||||||||||||| || || |||||| | ||||| || || |||||||| |||||||||| |||||| |
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| T |
18642925 |
atgacccttcaaggaaatatgcaggttatcaaaagcgtaacatcttgagcttgaaaccaaactcagaacttaagata |
18642849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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