View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10102_low_26 (Length: 240)
Name: NF10102_low_26
Description: NF10102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10102_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 34751981 - 34752153
Alignment:
| Q |
19 |
agatggtggaggaaggcgtgccaaagaccaacaactgtggaggttcaatttcactggtttgacattttctctgttttcctatttcccacgtctatctgat |
118 |
Q |
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| T |
34751981 |
agatggtggaggaaggcgtgccaaagaccaacaactgtggaggttcaatttcactggtttgacattttctctgttttcctatttcccacgtctatctgat |
34752080 |
T |
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| Q |
119 |
ttttcagtactctattctatcaccattctgcattcctatcaaacacttatcctacatataactgaaccatcaa |
191 |
Q |
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| T |
34752081 |
ttttcagtaccctattctatcaccattctgcattcctatcaaacacttatcctacatataactgaaccatcaa |
34752153 |
T |
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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 34752195 - 34752254
Alignment:
| Q |
181 |
tgaaccatcaacgctgaatatatattattaatttacacattcttaatcatcatcatcatc |
240 |
Q |
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| T |
34752195 |
tgaaccatcaacgctgaatatatattattaatttacacattcttaatcatcatcatcatc |
34752254 |
T |
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