View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10102_low_29 (Length: 238)
Name: NF10102_low_29
Description: NF10102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10102_low_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 45179276 - 45179499
Alignment:
| Q |
1 |
tctatactctttgaagcactaatgctggcactcttcaataagctgtgtggaatgtagtttggcttcgagagtccatttaatttgcacgcctgacgtttta |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45179276 |
tctatactctttgaagcacattagctggcactcttcaataagctgtgtggaatgtagtttggcttcgagagtccatttaatttgcacgcctgacgtttta |
45179375 |
T |
|
| Q |
101 |
gcatctgtcacattataccctggag--gtctctgaagatttgatccagtcagcatttcaatatcgttattttcattcttggaaatatgaactcagtaatt |
198 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45179376 |
gcatctgtcacattataccctggaggtgtctctgaagatttgatccagtcagcatttcaatatcgttattttcattcttggaaatatgaactcggtaatt |
45179475 |
T |
|
| Q |
199 |
acataaagtgaaattgcaatactc |
222 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
45179476 |
acataaagtgaaattgcaatactc |
45179499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 45172461 - 45172630
Alignment:
| Q |
1 |
tctatactctttgaagcactaatgctggcactcttcaataagctgtgtggaatgtagtttggcttcgagagtccatttaatttgcacgcctgacgtttta |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| | |||||||||| || ||||||| ||| | |
|
|
| T |
45172461 |
tctatacactttgaagcactaatgctggcactcttcaacaagctacgtggactgtagtttggctttgcgagtccattt----tgagcgcctgagttttca |
45172556 |
T |
|
| Q |
101 |
gcatctgtcacattataccctggaggtctctgaagatttgatccagtcagcatttcaatatcgttattttcatt |
174 |
Q |
| |
|
||||||||||||||| | |||||||| |||||||||| ||||||||| |||||||||||||||| |||||||| |
|
|
| T |
45172557 |
gcatctgtcacattagaacctggagggctctgaagatctgatccagttggcatttcaatatcgttgttttcatt |
45172630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University