View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10102_low_6 (Length: 437)

Name: NF10102_low_6
Description: NF10102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10102_low_6
NF10102_low_6
[»] chr3 (2 HSPs)
chr3 (14-327)||(21764942-21765253)
chr3 (281-317)||(21765260-21765296)
[»] chr7 (8 HSPs)
chr7 (245-437)||(42860361-42860553)
chr7 (298-437)||(42856347-42856486)
chr7 (8-231)||(42860155-42860373)
chr7 (346-437)||(42848198-42848289)
chr7 (103-231)||(42853965-42854093)
chr7 (13-231)||(42852500-42852707)
chr7 (329-433)||(42852842-42852946)
chr7 (317-437)||(42854725-42854845)


Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 327
Target Start/End: Original strand, 21764942 - 21765253
Alignment:
Q  14 aagaataaatatgaaactagaggcagatatttcagggcagatatccaaacatgcacccccaatcaagcagactctcagttgcctggattaacccaactga 113  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||  |||||||||| |||||||||||||| | ||||||||||||    
T  21764942 aagaataaatatgaaactagaggcagatatttcagagcagatatccggacatgcaccc--aatcaagcaggctctcagttgcctgaactaacccaactga 21765039  T
Q  114 atgggaatgccctcccatcacagatgccatctttaggcgcatcaacgcttaatatggaccctcaagaatttcttagggcacgcgcagttgtacgagatag 213  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  21765040 atgggaatgccctcccatcacagatgtcatctttaggcgcatcaacgcttaatatggaccctcaagaatttcttagggcacgcgcagttgtacgagatgg 21765139  T
Q  214 gatgtgagttactatttggtttattttagggaagttgctatttgtttgtttaaccatttaatcagtttaaattttgatttagactttgattcaacgtatt 313  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||    
T  21765140 gatgtaagttactatttggtttattttagggaagttgctatttgtttgtttaactatttaattagttttaattttgatttagactttgattcaacatatt 21765239  T
Q  314 ttacagtggtattt 327  Q
    ||||| ||||||||    
T  21765240 ttacaatggtattt 21765253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 317
Target Start/End: Original strand, 21765260 - 21765296
Alignment:
Q  281 taaattttgatttagactttgattcaacgtattttac 317  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  21765260 taaattttgattttgactttgattcagcgtattttac 21765296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 245 - 437
Target Start/End: Original strand, 42860361 - 42860553
Alignment:
Q  245 aagttgctatttgtttgtttaaccatttaatcagtttaaattttgatttagactttgattcaacgtattttacagtggtatttacgacttgcttaacaac 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42860361 aagttgctatttgtttgtttaaccatttaatcagtttaaattttgatttagactttgattcaacgtattttacagtggtatttacgacttgcttgacaac 42860460  T
Q  345 attgagacacatttctttgtcttcagctatatagttattgcttaactttgaacattcaaggccattctgtcaaagttattgattaggatcact 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  42860461 attgagacacatttctttgtcttcagctatatagttattgcttaactttgaacttgcaaggccattctgtcaaagttattgattaggatcact 42860553  T

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Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 298 - 437
Target Start/End: Original strand, 42856347 - 42856486
Alignment:
Q  298 tttgattcaacgtattttacagtggtatttacgacttgcttaacaacattgagacacatttctttgtcttcagctatatagttattgcttaactttgaac 397  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42856347 tttgattcaacgtattttacagtggtatttacgacttgcttgacaacattgagacacatttctttgtcttcagctatatagttattgcttaactttgaac 42856446  T
Q  398 attcaaggccattctgtcaaagttattgattaggatcact 437  Q
     | |||||||||||||||||||||||||||||||||||||    
T  42856447 ttgcaaggccattctgtcaaagttattgattaggatcact 42856486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 42860155 - 42860373
Alignment:
Q  8 agagagaagaataaatatgaaactagaggcagatatttcagggcagatatccaaacatgcacccccaatcaagcagactctcagttgcctggattaaccc 107  Q
    |||| ||||||| ||||| |||||||||||||||||||||||||||||||||  ||||||||||  |||||||||| |||||| |||| ||||   || |    
T  42860155 agagtgaagaatgaatatcaaactagaggcagatatttcagggcagatatccggacatgcaccc--aatcaagcaggctctcaattgcttggacatactc 42860252  T
Q  108 aactgaatgggaatgccctcccatcacagatgccatctttaggcgcatcaacgcttaatatggaccctcaagaatttcttagggcacgcgcagttgtacg 207  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||| ||||||   |||||||||||||| |||| | || || | |     
T  42860253 aactgaatgggaatgccctcccatcactgatgccatctttaggcggatcaacgattaacatggac---caagaatttcttagagcacactcatttattca 42860349  T
Q  208 agataggatgtgagttactatttg 231  Q
    ||| ||||||| |||| |||||||    
T  42860350 agagaggatgtaagttgctatttg 42860373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 346 - 437
Target Start/End: Original strand, 42848198 - 42848289
Alignment:
Q  346 ttgagacacatttctttgtcttcagctatatagttattgcttaactttgaacattcaaggccattctgtcaaagttattgattaggatcact 437  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||| |||| |   |||||||||| ||||||||||||||||||||||||    
T  42848198 ttgaggcacatttctttgtcttccgctatatagttattgcttaacttagaacttatgaggccattctatcaaagttattgattaggatcact 42848289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 103 - 231
Target Start/End: Original strand, 42853965 - 42854093
Alignment:
Q  103 aacccaactgaatgggaatgccctcccatcacagatgccatctttaggcgcatcaacgcttaatatggaccctcaagaatttcttagggcacgcgcagtt 202  Q
    ||||||||||| |||||||| |||||||||||| |||  ||||||||||| ||||||  |||||||||||||| ||||||||||||| |||||| || ||    
T  42853965 aacccaactgactgggaatgtcctcccatcacaaatgttatctttaggcggatcaacaattaatatggaccctgaagaatttcttagagcacgctcattt 42854064  T
Q  203 gtacgagataggatgtgagttactatttg 231  Q
     | | ||| ||||||| |||||| |||||    
T  42854065 attcaagagaggatgtaagttaccatttg 42854093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 42852500 - 42852707
Alignment:
Q  13 gaagaataaatatgaaactagaggcagatatttcagggcagatatccaaacatgcacccccaatcaagcagactctcagttgcctggattaacccaactg 112  Q
    ||||||| |||||||| | | | ||||||||| ||||||| ||||| | ||| | ||||  ||||||||||  |||||||||||||||   || ||||||    
T  42852500 gaagaattaatatgaatcaacaagcagatattccagggcacatatctagacaggtaccc--aatcaagcagggtctcagttgcctggacagactcaactg 42852597  T
Q  113 aatgggaatgccctcccatcacagatgccatctttaggcgcatcaacgcttaatatggaccctcaagaatttcttagggcacgcgcagttgtacgagata 212  Q
    |||| ||||||||||||| ||||||||||||||||||||| |||| |  |||||| |         ||||||||||| |||||| || || | |||||||    
T  42852598 aatgtgaatgccctcccagcacagatgccatctttaggcggatcagcaattaatacg---------gaatttcttagagcacgcacacttatccgagata 42852688  T
Q  213 ggatgtgagttactatttg 231  Q
    |||||| ||||||||||||    
T  42852689 ggatgtaagttactatttg 42852707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 329 - 433
Target Start/End: Original strand, 42852842 - 42852946
Alignment:
Q  329 cgacttgcttaacaacattgagacacatttctttgtcttcagctatatagttattgcttaactttgaacattcaaggccattctgtcaaagttattgatt 428  Q
    |||||||||| || |||||||||||||||||||| ||| | ||| ||||||||||||||| |||||||| |   | |||||||| |||||||||||||||    
T  42852842 cgacttgcttgacgacattgagacacatttctttttctgctgctgtatagttattgcttatctttgaacttggcaagccattctatcaaagttattgatt 42852941  T
Q  429 aggat 433  Q
     ||||    
T  42852942 tggat 42852946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 42854725 - 42854845
Alignment:
Q  317 cagtggtatttacgacttgcttaacaacattgagacacatttctttgtcttcagctatatagttattgcttaactttgaacattcaaggccattctgtca 416  Q
    |||||||||||  ||||||||| |||||||||||   | |||||   ||||| ||||||||| ||||||||||||| |||| |   |||||||||| |||    
T  42854725 cagtggtatttgtgacttgcttgacaacattgaggtccgtttctgcatcttccgctatatagatattgcttaacttagaacttgtgaggccattctatca 42854824  T
Q  417 aagttattgattaggatcact 437  Q
    |||||||||||||||||||||    
T  42854825 aagttattgattaggatcact 42854845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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