View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10102_low_8 (Length: 399)
Name: NF10102_low_8
Description: NF10102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10102_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 27889795 - 27889421
Alignment:
| Q |
18 |
caaataagtcaattcaaacagacgctaaattaagccaa--gttagcacaaataaacaactaagagagtaaagacctgtttggagctgacaatatactatc |
115 |
Q |
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| T |
27889795 |
caaataagtcaattcaaacagacgttaaattaagccaattgttagcacaaataaacaactaagagagtaaagacctgtttggagctgacaatatactatc |
27889696 |
T |
|
| Q |
116 |
aaagttggaaactcaaaacctcctaataactggtaagtgatgacactgctacaaccacccaactatgtgaagcctggtaatcatggaagaaaagtaggag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27889695 |
aaagttggaaactcaaaacctcctaataactggtaagtgatgacactgctacaaccatccaactatgtgaagcctggtaatcatggaagaaaagtaggag |
27889596 |
T |
|
| Q |
216 |
ggtttctcacacatatatacaaagaatgaaggatttaaaagggtgagtggggtaagagttgaaaaaatcctgaatgtgactaaatgttaagtaaaggaga |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27889595 |
ggtttctcacacatatatacaaagaatgaaggatttaaaagggtgagtggggtaagagttgaaaaaatcctgaatgtgactaaatgttaagtaaagggga |
27889496 |
T |
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| Q |
316 |
aagagactttgaagaagcagtggtgtgaacaaagaaagaatgacaagaaccttgaaatacatattgtattgtatt |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27889495 |
aagagactttgaagaagcagtggtgtgaacaaagaaagaacgacaagaaccttgaaatacatattgtattgtatt |
27889421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 27984256 - 27984536
Alignment:
| Q |
18 |
caaataagtcaattcaaacagacgctaaattaagccaagttagcacaaataaacaactaagagagtaaagacctgtttggagctgacaatatactatcaa |
117 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27984256 |
caaataagtcaattcaaatatacgctaaattaagccaagttaacacaaataaacaactaagagagtaaagacctgtttggagctgacaatatactatcaa |
27984355 |
T |
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| Q |
118 |
agttggaaactcaaaacctcctaataactggtaagtgatgacactgctacaaccacccaactatgtgaagcctggtaatcatggaagaaaagtaggaggg |
217 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
27984356 |
agttggaaactcaaaacctcctaataacgggtaactgatgacactgctacaacctttcaactatttgaagcctggtaatcatggaagaaaagtatgaggg |
27984455 |
T |
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| Q |
218 |
tttctcacacatatatacaaagaatgaaggatttaaaagggtgagtggggtaagagttgaaaaaatcctgaatgtgactaa |
298 |
Q |
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||||||||| ||||||||||||||||||||||| | |||| |||||||||| |||||||||||| |||||||||||||||| |
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| T |
27984456 |
tttctcacagatatatacaaagaatgaaggattcataaggatgagtggggtcagagttgaaaaattcctgaatgtgactaa |
27984536 |
T |
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