View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_high_1 (Length: 676)
Name: NF10103_high_1
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 456
Target Start/End: Original strand, 48694736 - 48695176
Alignment:
| Q |
19 |
atataaccggcaagatcatggtggtcatcatcattcttctcttcatggttgttgttacttttcttttcttccatctttttgccaagggattctggtggac |
118 |
Q |
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| T |
48694736 |
atataaccggcaagatcatggtggtcatcatcattcttctcttcatggttattgttacttttcttttcttccatctttttgccaagggattctggtggac |
48694835 |
T |
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| Q |
119 |
tccgagtcggaggagcagtgacaacaattcccaatcccgaaggcgccggcgtagtggtcaagagggtggtggtcttgatccttccgtactcaactcccta |
218 |
Q |
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| T |
48694836 |
tcagagtcggaggagcagtgacaacaattcccaatcccgaaggcgccggcgtagtggtcaagagggtggtggtcttgatccttccgtactcaactcccta |
48694935 |
T |
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| Q |
219 |
cccatatcaatattcaattcaaaagaagatggttttgatttggagtgttcagtttgcctgtcggaagtggttgaaggagaaaaggtgagggttttgccta |
318 |
Q |
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| T |
48694936 |
cccatatcaatattcaattcaaaagaagatggttttgatttggagtgttcagtttgcctgtcggaagtggttgaaggagaaaaggtgagggttttgccta |
48695035 |
T |
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| Q |
319 |
aatgcaatcacatgtttcacatagattgcattgatatgtggttccattcccactcaacctgccctctttgcaggacaacacttgctgcaactcctcctcc |
418 |
Q |
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| T |
48695036 |
aatgcaatcacatgtttcacatagattgcattgatatgtggttccattcccactcaacctgccctctttgcaggacaacacttgctgcaactcctcctcc |
48695135 |
T |
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| Q |
419 |
ctcctcagtagtagtagtagaag---tagaatcatcaacat |
456 |
Q |
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| T |
48695136 |
ctcctcagtagtagtagtagtagacatagaatcatcaacat |
48695176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 474 - 667
Target Start/End: Original strand, 48695200 - 48695396
Alignment:
| Q |
474 |
tttcccacaaatgtcttgatttggggcaaccacaaccaaataacctctt---cttcatctactacttcggaacaaaacacttcttcatcatcatccgatg |
570 |
Q |
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| T |
48695200 |
tttcccacaaatgtcttgatttggggcaaccacaaccaaataacctcttcttcttcatctactacttcggaacaaaacacttcttcatcatcatccgatg |
48695299 |
T |
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| Q |
571 |
gtgataatactataaataacaacagcagagctgatgatgaaggaaatggaatgttaaggattgatatacccaatgagtgtgaggccactacttcatc |
667 |
Q |
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| T |
48695300 |
gtgataatactataaataacaacagcagagctgatgatgaaggaaatggaatgttaaggattgatatacccaatgagtgtgaggccactacttcatc |
48695396 |
T |
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