View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10103_high_19 (Length: 280)

Name: NF10103_high_19
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10103_high_19
NF10103_high_19
[»] chr7 (12 HSPs)
chr7 (1-271)||(36906115-36906385)
chr7 (32-139)||(39785482-39785594)
chr7 (10-79)||(30074616-30074685)
chr7 (10-79)||(33941624-33941693)
chr7 (207-262)||(44541154-44541210)
chr7 (10-79)||(1691696-1691765)
chr7 (10-107)||(24658444-24658540)
chr7 (10-114)||(25232961-25233065)
chr7 (26-108)||(39781009-39781091)
chr7 (10-108)||(43265929-43266027)
chr7 (17-107)||(46090190-46090280)
chr7 (57-116)||(26824472-26824531)
[»] scaffold0311 (1 HSPs)
scaffold0311 (10-200)||(831-1021)
[»] chr5 (10 HSPs)
chr5 (44-199)||(33824755-33824915)
chr5 (30-177)||(5568959-5569111)
chr5 (10-107)||(7607249-7607346)
chr5 (16-102)||(29670000-29670086)
chr5 (17-170)||(36744891-36745048)
chr5 (17-79)||(5069894-5069956)
chr5 (116-178)||(35676353-35676414)
chr5 (10-108)||(17076607-17076707)
chr5 (116-202)||(25818997-25819085)
chr5 (116-173)||(26459643-26459700)
[»] chr3 (10 HSPs)
chr3 (10-173)||(24309827-24309994)
chr3 (10-171)||(36475420-36475585)
chr3 (10-107)||(7856520-7856617)
chr3 (10-107)||(38572997-38573094)
chr3 (16-79)||(23778309-23778372)
chr3 (21-144)||(26285820-26285947)
chr3 (27-107)||(52308856-52308936)
chr3 (119-205)||(6714469-6714555)
chr3 (26-108)||(25070722-25070804)
chr3 (26-108)||(36617788-36617870)
[»] chr8 (5 HSPs)
chr8 (28-173)||(44873236-44873385)
chr8 (16-203)||(7681357-7681548)
chr8 (32-170)||(2148338-2148481)
chr8 (116-174)||(10381371-10381429)
chr8 (26-108)||(45486206-45486288)
[»] chr2 (9 HSPs)
chr2 (10-203)||(7700260-7700456)
chr2 (122-199)||(34878744-34878821)
chr2 (10-143)||(32032955-32033092)
chr2 (10-191)||(18703646-18703820)
chr2 (10-107)||(34190047-34190144)
chr2 (30-177)||(38417736-38417888)
chr2 (116-197)||(27447802-27447883)
chr2 (10-79)||(34878627-34878696)
chr2 (213-269)||(41768616-41768672)
[»] chr6 (4 HSPs)
chr6 (41-188)||(16461648-16461799)
chr6 (33-205)||(30705212-30705383)
chr6 (17-107)||(6689226-6689316)
chr6 (26-142)||(30702677-30702798)
[»] chr4 (6 HSPs)
chr4 (17-144)||(2158610-2158741)
chr4 (10-183)||(1111940-1112117)
chr4 (84-177)||(35390424-35390522)
chr4 (36-173)||(2813940-2814081)
chr4 (17-78)||(33518123-33518184)
chr4 (18-79)||(36247920-36247980)
[»] scaffold0002 (1 HSPs)
scaffold0002 (10-162)||(461315-461471)
[»] chr1 (2 HSPs)
chr1 (16-79)||(23353437-23353500)
chr1 (116-177)||(23347803-23347864)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 36906385 - 36906115
Alignment:
Q  1 cttgccaaatgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttca 100  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36906385 cttgccaaatataatttatatagaaagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttca 36906286  T
Q  101 ttctaattgtattgcacaatgttatttcgtatttttagtatagtattcataattatttctttgaaattttagccacatgtataacaaatgtttagatccg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| ||||||||||||||||    
T  36906285 ttctaattgtattgcacaatgttatttcgtatttttagtatagtattcataattatttctttaagattttagtcacatgtatatcaaatgtttagatccg 36906186  T
Q  201 cccttaacaacacaccctccacaacccatctccctctttgccccaccacctcattgcacctttctctctgc 271  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  36906185 cccttaacaacacaccctccacaacccatctccctctttaccccaccacctcattgcacctttctcactgc 36906115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 139
Target Start/End: Complemental strand, 39785594 - 39785482
Alignment:
Q  32 gttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaattgtattgc-----acaatgttatt 126  Q
    |||||||| ||||||| ||||  |||||||||| |||| ||| |||||  | ||||||||||||||||||| ||||||||||||     |||||||||||    
T  39785594 gttcttttaacaattatcaatgttgttattttagctcatttttaacaaatggatagtagacgattttcattgtaattgtattgcatcaaacaatgttatt 39785495  T
Q  127 tcgtatttttagt 139  Q
    || ||||||||||    
T  39785494 tcttatttttagt 39785482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 30074616 - 30074685
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaa 79  Q
    ||||| ||||||||| |||||||||||||| |||||||||||| |||| ||||||||| | |||||||||    
T  30074616 tgtaacttatatagaaagagatgttcttttaacaattaacaatgatgtcattttaacttattttcaacaa 30074685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 33941624 - 33941693
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaa 79  Q
    ||||| ||||||||| ||| |||||||||| ||||||| |||| |||||||||||||||| |||||||||    
T  33941624 tgtaacttatatagaaagaaatgttcttttaacaattagcaatgatgttattttaactcattttcaacaa 33941693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 44541154 - 44541210
Alignment:
Q  207 acaacacaccctccacaacccatctccctctttgccc-caccacctcattgcacctt 262  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||    
T  44541154 acaacacatcctccacaacccatctccctctttgccctcaccacctcgttgcacctt 44541210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 1691765 - 1691696
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaa 79  Q
    ||||| ||||||| | ||||||||||| || |||||||||||| || | ||||||||||| |||||||||    
T  1691765 tgtaacttatatataaagagatgttctattaacaattaacaatgatatcattttaactcattttcaacaa 1691696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 24658540 - 24658444
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaat 107  Q
    ||||| ||||||||| ||||||||||| || ||| ||| |||| |||| ||||||||||| |||||||||  | |||| | |||||||||||| ||||    
T  24658540 tgtaacttatatagaaagagatgttctattaaca-ttagcaatgatgtcattttaactcattttcaacaaatggataggaaacgattttcattgtaat 24658444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 25233065 - 25232961
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaattg 109  Q
    ||||||||||||| | ||| |||||||||| | ||||| ||    ||||||||||||||| |||||||||  | |||| |||| ||||||||| |||||     
T  25233065 tgtaatttatataaaaagaaatgttcttttaaaaattagcagcgctgttattttaactcattttcaacaaatggataggagacaattttcattgtaatta 25232966  T
Q  110 tattg 114  Q
    |||||    
T  25232965 tattg 25232961  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 39781009 - 39781091
Alignment:
Q  26 agagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaatt 108  Q
    |||||||||||||| ||||||| || | |||||||| || |||| |||||||||  | || | |||||||||||||| |||||    
T  39781009 agagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaatt 39781091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 43265929 - 43266027
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaatt 108  Q
    ||||| || |||||| |||||||||||||| ||||||| || | |||||||| || |||| |||||||||  | || | ||| |||||||||| |||||    
T  43265929 tgtaacttttatagaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagatgattttcattgtaatt 43266027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 46090190 - 46090280
Alignment:
Q  17 tatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaat 107  Q
    |||||||| ||||| |||||||| |||||||  ||  |||| ||||||| ||| |||||||||  |||||  |||||||||||||| ||||    
T  46090190 tatatagaaagagaagttcttttaacaattactaaggatgtcattttaattcattttcaacaaatgaatatgagacgattttcattgtaat 46090280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 26824472 - 26824531
Alignment:
Q  57 ttattttaactcactttcaacaa-tcgaatagtagacgattttcattctaattgtattgca 116  Q
    |||||||| |||| ||||||||| |||| ||| |||||||||||||| |||||||||||||    
T  26824472 ttattttacctcattttcaacaaatcga-taggagacgattttcattgtaattgtattgca 26824531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 831 - 1021
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaattg 109  Q
    ||||| ||||||||| ||| |||||||||||||||||| |||| |||||| |||| |||| |||||||||||||||||||||||||||||||| ||||||    
T  831 tgtaacttatatagaaagatatgttcttttgacaattagcaatgatgttagtttagctcattttcaacaatcgaatagtagacgattttcattgtaattg 930  T
Q  110 tattgcacaatgttatttcgtatttttagtatagtattcataattatttctttgaaattttagccacatgtataacaaatgtttagatccg 200  Q
    ||||||||||||||||||| ||||||||||||||| ||| | ||| ||||||||||||||||| |||| ||||| ||||| | ||||||||    
T  931 tattgcacaatgttatttcttatttttagtatagttttcgtcattgtttctttgaaattttagtcacacgtatatcaaatatctagatccg 1021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 44 - 199
Target Start/End: Original strand, 33824755 - 33824915
Alignment:
Q  44 attaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaattgtattgc-----acaatgttatttcgtatttttag 138  Q
    |||| |||| |||||||||||||||| |||||||||  |||||| |||||||||||||| |||||||| |||     ||||||||||||| ||||||||     
T  33824755 attagcaatgatgttattttaactcattttcaacaaatgaataggagacgattttcattgtaattgtactgcatcaaacaatgttatttcttatttttaa 33824854  T
Q  139 tatagtattcataattatttctttgaaattttagccacatgtataacaaatgtttagatcc 199  Q
    |||| | | ||| ||| ||||||| |||||||||||| | ||||| ||||| ||| |||||    
T  33824855 tatattttgcattattgtttctttaaaattttagccataagtataccaaatatttggatcc 33824915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 5569111 - 5568959
Alignment:
Q  30 atgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaattgtattgca-----caatgtta 124  Q
    |||||||||| | ||||| ||||  ||||||||||||||| |||||||||  | |||  |||| ||||||||| |||||||||||||     ||||||||    
T  5569111 atgttcttttaaaaattagcaatgttgttattttaactcattttcaacaaatggatacgagacaattttcattgtaattgtattgcatcaaccaatgtta 5569012  T
Q  125 tttcgtatttttagtatagtattcataattatttctttgaaattttagccaca 177  Q
    |||| |||||||| |||||| | ||| ||| ||||||| ||||||||||||||    
T  5569011 tttcttatttttaatatagtttgcattattttttcttttaaattttagccaca 5568959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 7607249 - 7607346
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaat 107  Q
    ||||| ||||||||| ||||||||||| || |||||||||||| |||| |||||| |||| |||||||||  | |||| |||||||||| ||| ||||    
T  7607249 tgtaacttatatagaaagagatgttctattaacaattaacaatgatgtcattttagctcattttcaacaaatggatagaagacgatttttattgtaat 7607346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 29670086 - 29670000
Alignment:
Q  16 ttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcatt 102  Q
    ||||||||| | |||||||||||| ||||||| |||||||||||||||| || | |||||||||  || ||| |||| |||||||||    
T  29670086 ttatatagaaaaagatgttcttttaacaattatcaataatgttattttagcttattttcaacaaatgattagaagacaattttcatt 29670000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 36745048 - 36744891
Alignment:
Q  17 tatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattcta----attgtat 112  Q
    |||||||| |||||||||||||| ||||||| |||| |||| |||||| |||| |||||||||  | |||  |||||||||| ||| ||    |||||||    
T  36745048 tatatagaaagagatgttcttttaacaattagcaatgatgtcattttagctcattttcaacaaatggatataagacgattttaattgtaatttattgtat 36744949  T
Q  113 tgcacaatgttatttcgtatttttagtatagtattcataattatttctttgaaatttt 170  Q
       ||||| ||||||| || ||||| |||||| | ||| ||| ||||||| |||||||    
T  36744948 caaacaatattatttcttacttttaatatagtttgcattattgtttctttaaaatttt 36744891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 5069956 - 5069894
Alignment:
Q  17 tatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaa 79  Q
    |||||| | ||||||||| |||| |||||||||||| || | ||||||||||| |||||||||    
T  5069956 tatatataaagagatgttattttaacaattaacaatgatatcattttaactcattttcaacaa 5069894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 35676353 - 35676414
Alignment:
Q  116 acaatgttatttcgtatttttagtatagtattcataattatttctttgaaattttagccacat 178  Q
    ||||| ||||||| |||||||| |||||| | ||| ||| |||||||||||||||||||||||    
T  35676353 acaatattatttcttatttttaatatagtttgcattatt-tttctttgaaattttagccacat 35676414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 17076607 - 17076707
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttg--acaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaat 107  Q
    ||||| |||||| || ||||||||| ||||   ||||||| || | |||||||| || |||| |||||||||  |||| |||||||||||||||| ||||    
T  17076607 tgtaacttatattgaaagagatgtttttttttcacaattagcactgatgttattctagctcattttcaacaaatgaatggtagacgattttcattgtaat 17076706  T
Q  108 t 108  Q
    |    
T  17076707 t 17076707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 202
Target Start/End: Complemental strand, 25819085 - 25818997
Alignment:
Q  116 acaatgttatttcgtatttttagtatagtattcataat--tatttctttgaaattttagccacatgtataacaaatgtttagatccgcc 202  Q
    ||||||||||||| |||||||| |||||| | ||| ||  | ||||||||||||||||||| ||  | || ||||||| ||||||||||    
T  25819085 acaatgttatttcctatttttaatatagtttacattatattttttctttgaaattttagccccacatgtaccaaatgtctagatccgcc 25818997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 26459700 - 26459643
Alignment:
Q  116 acaatgttatttcgtatttttagtatagtattcataattatttctttgaaattttagc 173  Q
    |||||||| |||| |||||||| ||| || | ||||||| ||||||||||||||||||    
T  26459700 acaatgttctttcttatttttaatatggtttgcataattgtttctttgaaattttagc 26459643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 173
Target Start/End: Complemental strand, 24309994 - 24309827
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattcta---- 105  Q
    ||||| ||| ||||| |||||||||||||| |||||||||||| |||| ||||| ||| | |||||||||  | |||| |||||||||||||| ||        
T  24309994 tgtaacttacatagaaagagatgttcttttaacaattaacaatgatgtgattttgacttattttcaacaaatggataggagacgattttcattgtaatgt 24309895  T
Q  106 attgtattgcacaatgttatttcgtatttttagtatagtattcataattatttctttgaaattttagc 173  Q
    |||||||   ||||| ||||||| |||||||| |||||| | ||| ||| ||||||||||||||||||    
T  24309894 attgtatcaaacaatattatttcttatttttaatatagtttgcattattgtttctttgaaattttagc 24309827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 171
Target Start/End: Complemental strand, 36475585 - 36475420
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattcta---- 105  Q
    ||||| ||||||| | |||||||||||||| ||||||| |||| |||| |||||  |||| ||| |||||  |||| | |||||||||||||| ||        
T  36475585 tgtaacttatataaaaagagatgttcttttaacaattagcaatgatgtcattttcgctcatttttaacaaatgaatgggagacgattttcattgtagtgt 36475486  T
Q  106 attgtattgcacaatgttatttcgtatttttagtatagtattcataattatttctttgaaatttta 171  Q
    |||||||   ||||||||||||| |||||||| |||||| | | | ||| ||||||||||||||||    
T  36475485 attgtatcaaacaatgttatttcttatttttaatatagtttgcgttattgtttctttgaaatttta 36475420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 7856617 - 7856520
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaat 107  Q
    ||||| ||||||||| |||||||||||||| |||||||||||| | || |||||| |||| ||| |||||  | |||| |||||||||| ||| ||||    
T  7856617 tgtaacttatatagaaagagatgttcttttaacaattaacaatgacgtcattttagctcatttttaacaaatggataggagacgatttttattataat 7856520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 38573094 - 38572997
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaat 107  Q
    ||||| ||||||||| ||||||||||| || ||||||| ||||  ||| |||||| |||| |||||||||  | |||| |||||||||||||| ||||    
T  38573094 tgtaacttatatagaaagagatgttctattaacaattagcaatgctgtcattttagctcattttcaacaaatggataggagacgattttcattgtaat 38572997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 23778372 - 23778309
Alignment:
Q  16 ttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaa 79  Q
    ||||||||| |||||||||||||| ||||||| |||| |||| |||||| |||| |||||||||    
T  23778372 ttatatagaaagagatgttcttttaacaattagcaatgatgtcattttagctcattttcaacaa 23778309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 26285820 - 26285947
Alignment:
Q  21 tagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattcta----attgtattgca 116  Q
    |||| ||| |||||||||| ||||||| |||| ||||  |||||||||| |||||||||  | |||| | |||||||||||| ||    |||||||   |    
T  26285820 tagaaagatatgttcttttaacaattagcaatgatgtccttttaactcattttcaacaaatggataggaaacgattttcattgtaatgtattgtatcaaa 26285919  T
Q  117 caatgttatttcgtatttttagtatagt 144  Q
    |||||||||||| |||||||| ||||||    
T  26285920 caatgttatttcttatttttaatatagt 26285947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 52308856 - 52308936
Alignment:
Q  27 gagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaat 107  Q
    |||||||||| || |||||||||||| |||| |||||| |||| |||||||||  | |||| ||| |||||||||| ||||    
T  52308856 gagatgttctattaacaattaacaatgatgtcattttagctcattttcaacaaatggataggagatgattttcattgtaat 52308936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 205
Target Start/End: Original strand, 6714469 - 6714555
Alignment:
Q  119 atgttatttcgtatttttagtatagtattcataattatttctttgaaattttagccacatgtataacaaatgtttagatccgccctt 205  Q
    |||||||||| |||||||| |||| |   ||| ||||||||||| ||||||||| ||||| | || | |||||||||||||| ||||    
T  6714469 atgttatttcttatttttaatataattaacattattatttctttaaaattttagtcacatatctaccgaatgtttagatccgtcctt 6714555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 25070722 - 25070804
Alignment:
Q  26 agagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaatt 108  Q
    |||||||||||||| ||||||| || | |||||||| || |||| |||||||||  | || | |||||||||||||| |||||    
T  25070722 agagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaatt 25070804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 36617788 - 36617870
Alignment:
Q  26 agagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaatt 108  Q
    |||||||||||||| ||||||| || | |||||||| || |||| |||||||||  | || | |||||||||||||| |||||    
T  36617788 agagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaatt 36617870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 173
Target Start/End: Complemental strand, 44873385 - 44873236
Alignment:
Q  28 agatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattcta----attgtattgcacaatgtt 123  Q
    |||||||||||| ||||||| |||| |||||||||||||||| |||||||||  | |||| |||||||||||||| ||    |||||||   ||||| ||    
T  44873385 agatgttcttttaacaattagcaatcatgttattttaactcattttcaacaaatggatagaagacgattttcattgtaatgtattgtatcaaacaatatt 44873286  T
Q  124 atttcgtatttttagtatagtattcataattatttctttgaaattttagc 173  Q
    ||||| |||||||| |||||| | ||| ||| ||||||| ||||||||||    
T  44873285 atttcttatttttaatatagtttgcattattgtttctttaaaattttagc 44873236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 7681357 - 7681548
Alignment:
Q  16 ttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaat----tgta 111  Q
    ||||||||| ||| |||||||||| ||||||| |||| |||| ||||||   || |||||||||  | |||| | |||||||||||| ||||    ||||    
T  7681357 ttatatagaaagatatgttcttttaacaattagcaatgatgtcattttagaacattttcaacaaatggataggaaacgattttcattgtaatatattgta 7681456  T
Q  112 ttgcacaatgttatttcgtatttttagtatagtattcataattatttctttgaaattttagccacatgtataacaaatgtttagatccgccc 203  Q
    |   ||||||||||||| | |||||| |||||| |  || |||||||||||||||||||| |||||  |||| ||||||| |||||||||||    
T  7681457 tcaaacaatgttatttcttgtttttaatatagtttgtattattatttctttgaaattttaaccacacatataccaaatgtctagatccgccc 7681548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 170
Target Start/End: Complemental strand, 2148481 - 2148338
Alignment:
Q  32 gttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaattgtattgca-----caatgttatt 126  Q
    |||||||| | ||||| |||| ||| |||||||  ||  |||||||||  | ||| ||||  ||||||||| |||||||||||||     ||||||||||    
T  2148481 gttcttttaaaaattagcaatgatgctattttagttcgttttcaacaaatgtataatagattattttcattgtaattgtattgcatcaatcaatgttatt 2148382  T
Q  127 tcgtatttttagtatagtattcataattatttctttgaaatttt 170  Q
    || ||||||||||||| | | ||| ||  |||||||||||||||    
T  2148381 tcttatttttagtataatttgcattatagtttctttgaaatttt 2148338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 10381429 - 10381371
Alignment:
Q  116 acaatgttatttcgtatttttagtatagtattcataattatttctttgaaattttagcc 174  Q
    ||||||||| ||| |||||||| |||||| | ||| ||| |||||||||||||||||||    
T  10381429 acaatgttacttcttatttttaatatagtttacattattgtttctttgaaattttagcc 10381371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 45486206 - 45486288
Alignment:
Q  26 agagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaatt 108  Q
    |||||||||||||| ||||||| || | |||||||| || |||| |||||||||  | || | |||||||||||||| |||||    
T  45486206 agagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaatt 45486288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 7700456 - 7700260
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaat-- 107  Q
    ||||| ||||||||| ||| |||||||||| ||||||| |||| |||| |||||| |||| ||||||||   |||||  ||| ||||||||||  |||      
T  7700456 tgtaacttatatagaaaga-atgttcttttaacaattagcaatgatgtcattttagctcattttcaacatatgaatatgagatgattttcattgcaatgt 7700358  T
Q  108 --tgtattgcacaatgttatttcgtatttttagtatagtattcataattatttctttgaaattttagccacatgtataacaaatgtttagatccgccc 203  Q
      |||||   ||||||||||||| |||||||  |||||| | ||| ||| ||||||||||||||||||||||  |||| ||||||| |||||||||||    
T  7700357 attgtatcaaacaatgttatttcttattttttatatagtttacattattgtttctttgaaattttagccacacatatatcaaatgtgtagatccgccc 7700260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 34878744 - 34878821
Alignment:
Q  122 ttatttcgtatttttagtatagtattcataattatttctttgaaattttagccacatgtataacaaatgtttagatcc 199  Q
    ||||||| ||||||||||||||| ||||| ||| ||||||| ||||||||||| ||| |||| ||||||| |||||||    
T  34878744 ttatttcttatttttagtatagtcttcattattgtttctttaaaattttagccccatatataccaaatgtctagatcc 34878821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 32033092 - 32032955
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaat-- 107  Q
    ||||| ||||||||| |||||||||||||| |||||||  | | |||| ||||||||||| ||| |||||  | ||||  ||||||||||||||||||      
T  32033092 tgtaacttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgt 32032993  T
Q  108 --tgtattgcacaatgttatttcgtatttttagtatag 143  Q
      |||||   ||||||||||||| |||||||| |||||    
T  32032992 attgtatcaaacaatgttatttcttatttttaatatag 32032955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 18703646 - 18703820
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaattg 109  Q
    ||||| |||| |||| |||||||||||||| ||||||| ||||  | |||||||  |||| ||| |||||  | |||| |||| ||||||||| ||||||    
T  18703646 tgtaacttatttagaaagagatgttcttttaacaattagcaatgtttttatttttgctcatttttaacaaatggataggagacaattttcattgtaattg 18703745  T
Q  110 tattgcacaatgttatttcgtatttttagtatagtattcataattatttctttgaaattttagccacatgtataacaaatgt 191  Q
     ||   ||||||||||||       ||| |||||| | ||| ||| |||||||||||||||||||||| ||||| |||||||    
T  18703746 catcaaacaatgttattt-------ttaatatagtttgcattattgtttctttgaaattttagccacacgtatatcaaatgt 18703820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 34190144 - 34190047
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaat 107  Q
    ||||| ||||||||| ||||||||||| || ||||||| |||| || | ||||||  ||| |||||||||  | |||| |||||||||||||| ||||    
T  34190144 tgtaacttatatagaaagagatgttctattaacaattagcaatgatatcattttagttcattttcaacaaatggataggagacgattttcattgtaat 34190047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 38417888 - 38417736
Alignment:
Q  30 atgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaattgtattgca-----caatgtta 124  Q
    |||||||||||| | ||||||||  || |||||||| ||| |||||||||  | |||| |||| ||||||| | |||||||||||||     ||| ||||    
T  38417888 atgttcttttgaaagttaacaatgttgctattttaaatcattttcaacaaatggataggagacaattttcactgtaattgtattgcatcaaccaaagtta 38417789  T
Q  125 tttcgtatttttagtatagtattcataattatttctttgaaattttagccaca 177  Q
    |||| |||||||| |||||  | ||| | | ||||||| ||||||||| ||||    
T  38417788 tttcttatttttaatatagcttgcattagtttttctttaaaattttaggcaca 38417736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 27447802 - 27447883
Alignment:
Q  116 acaatgttatttcgtatttttagtatagtattcataattatttctttgaaattttagccacatgtataacaaatgtttagat 197  Q
    ||||| ||||||| ||||||||  ||| | | ||| ||| ||||||||||||||||||||||  |||| ||||||| |||||    
T  27447802 acaatattatttcttatttttaacataatctgcattattttttctttgaaattttagccacacatatatcaaatgtctagat 27447883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 34878627 - 34878696
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaa 79  Q
    ||||| ||||||||| | | |||||||||| |||||||||||| | ||  |||||||||| |||||||||    
T  34878627 tgtaacttatatagaaatatatgttcttttaacaattaacaatgacgtctttttaactcattttcaacaa 34878696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 41768672 - 41768616
Alignment:
Q  213 caccctccacaacccatctccct-ctttgccccaccacctcattgcacctttctctct 269  Q
    ||||||||||||||||||||||| |||  ||||||||||||| |||| ||||||||||    
T  41768672 caccctccacaacccatctccctacttgcccccaccacctcaatgca-ctttctctct 41768616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 41 - 188
Target Start/End: Original strand, 16461648 - 16461799
Alignment:
Q  41 acaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaat----tgtattgcacaatgttatttcgtattttt 136  Q
    |||||||||||| |||| |||| | |||| |||||||||  |||||| |||| ||||||||| ||||    |||||   ||||||||||||| |||||||    
T  16461648 acaattaacaatgatgtcatttaagctcattttcaacaaatgaataggagacaattttcattgtaatatattgtatcaaacaatgttatttcttattttt 16461747  T
Q  137 agtatagtattcataattatttctttgaaattttagccacatgtataacaaa 188  Q
    | |||||| | ||| ||| ||||||||||||||||||| ||| |||| ||||    
T  16461748 aatatagtttgcattattgtttctttgaaattttagccccatatatatcaaa 16461799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 205
Target Start/End: Complemental strand, 30705383 - 30705212
Alignment:
Q  33 ttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaattgtattgcacaatgttatttcgtat 132  Q
    ||||||| |||||||||| | | |||||||||| |||  ||||||||  | ||| ||||||||||| ||| || ||||||   ||||||||||||| |||    
T  30705383 ttcttttcacaattaacattgaagttattttaaatcatgttcaacaaatggataatagacgatttttattgta-ttgtatcaaacaatgttatttcttat 30705285  T
Q  133 ttttagtatagtattcataattatttctttgaaattttagccacatgtataacaaatgtttagatccgccctt 205  Q
    |||||||||| | |  || || ||||||||||||||| || || ||  ||| ||||||||| | |||||||||    
T  30705284 ttttagtataatttgaatcataatttctttgaaatttcagtcatatcaatatcaaatgtttgggtccgccctt 30705212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 6689316 - 6689226
Alignment:
Q  17 tatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaat 107  Q
    |||||||| ||||||| |||||| ||||||| |||| |||| |||||| |||| |||||| ||  | |||| |||||||||||||| ||||    
T  6689316 tatatagaaagagatgatcttttaacaattagcaatgatgtcattttagctcaatttcaataaatggataggagacgattttcattgtaat 6689226  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 30702798 - 30702677
Alignment:
Q  26 agagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaattgtattg-----cacaat 120  Q
    |||||||||||||| |||||||| | | | ||||||||| |||| |||| ||||  | ||||||||||||||| ||  | |||||||||      |||||    
T  30702798 agagatgttctttttacaattaaaactgaagttattttagctcattttcgacaactggatagtagacgatttttatcgtcattgtattgtatcaaacaat 30702699  T
Q  121 gttatttcgtatttttagtata 142  Q
    |||||||| |||||||||||||    
T  30702698 gttatttcttatttttagtata 30702677  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 2158741 - 2158610
Alignment:
Q  17 tatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattcta----attgtat 112  Q
    |||||||| |||||| ||||||| ||||||| |||| || |||||||| |||| |||||||||  | |||| |||||||||||||| ||    |||||||    
T  2158741 tatatagaaagagatcttcttttaacaattagcaatgatattattttagctcattttcaacaaatggataggagacgattttcattgtaatgtattgtat 2158642  T
Q  113 tgcacaatgttatttcgtatttttagtatagt 144  Q
       ||||||||||||| |||||||| ||||||    
T  2158641 caaacaatgttatttcttatttttaatatagt 2158610  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 183
Target Start/End: Complemental strand, 1112117 - 1111940
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaattg 109  Q
    ||||| ||||||||| | | |||||||||| |||||||||||  | |||||||||  ||| |||||||||  | |||  |||| ||||| ||| ||||||    
T  1112117 tgtaacttatatagaaatacatgttcttttaacaattaacaacgaggttattttagatcattttcaacaaatggataagagacaattttgattgtaattg 1112018  T
Q  110 tattgc-----acaatgttatttcgtatttttagtatagtattcataattatttctttgaaattttagccacatgtata 183  Q
    ||| ||     ||||||||||||| |||| ||| || ||| | ||| |||||||| |||||||||||||||||| ||||    
T  1112017 tatcgcatcaaacaatgttatttcttattattaata-agtttgcattattatttcattgaaattttagccacatatata 1111940  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 177
Target Start/End: Complemental strand, 35390522 - 35390424
Alignment:
Q  84 atagtagacgattttcattctaattgtattgca-----caatgttatttcgtatttttagtatagtattcataattatttctttgaaattttagccaca 177  Q
    |||||||| |||||| ||| ||||| |||||||     |||||||||||  ||||||||||||| | | ||| || |||||||||||||||||||||||    
T  35390522 atagtagatgatttttattgtaattttattgcatcaaacaatgttatttattatttttagtataatttacatcataatttctttgaaattttagccaca 35390424  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 2814081 - 2813940
Alignment:
Q  36 ttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaat----tgtattgcacaatgttatttcgta 131  Q
    |||| ||||| | |||| ||||||||||| |||| |||||||||  | |||  |||||| ||||||| ||||    |||||   ||||| ||||||| ||    
T  2814081 ttttaacaataagcaatgatgttattttagctcattttcaacaaatggatatgagacgactttcattgtaatgtattgtatcaaacaattttatttcata 2813982  T
Q  132 tttttagtatagtattcataattatttctttgaaattttagc 173  Q
    |||||| |||||| | ||| ||| ||||||||||||||||||    
T  2813981 tttttaatatagtttgcattattgtttctttgaaattttagc 2813940  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 33518184 - 33518123
Alignment:
Q  17 tatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaaca 78  Q
    |||||||| | |||||||||||| ||||||| |||| |||| |||||| |||| ||||||||    
T  33518184 tatatagaaatagatgttcttttaacaattagcaatgatgtcattttagctcattttcaaca 33518123  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 36247980 - 36247920
Alignment:
Q  18 atatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaa 79  Q
    ||||||| ||| |||||||||| |||||||||||| |||| |||||| |||| |||||||||    
T  36247980 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctca-tttcaacaa 36247920  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 461315 - 461471
Alignment:
Q  10 tgtaatttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaattg 109  Q
    ||||| ||||||| | ||| ||||| |||| ||||||| |||| |||| |||||| |||| |||||||||    |||| |||||||||||||| ||| ||    
T  461315 tgtaacttatatataaagatatgttattttaacaattagcaatgatgtcattttagctcattttcaacaaatagataggagacgattttcattgtaa-tg 461413  T
Q  110 tattg-----cacaatgttatttcgtatttttagtatagtattcataattatttcttt 162  Q
    |||||      ||||||||| ||| |||||||| |||||| | ||| |||||||||||    
T  461414 tattgtaccaaacaatgttacttcttatttttaatatagtttgcattattatttcttt 461471  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 23353500 - 23353437
Alignment:
Q  16 ttatatagatagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaa 79  Q
    ||||||||| ||| |||||||||| | | ||| |||| |||||||||||||||| |||||||||    
T  23353500 ttatatagaaagaaatgttcttttaatatttagcaattatgttattttaactcattttcaacaa 23353437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 23347864 - 23347803
Alignment:
Q  116 acaatgttatttcgtatttttagtatagtattcataattatttctttgaaattttagccaca 177  Q
    ||||||||||||| ||| |||| |||||| | ||| ||| ||| ||||||||||||||||||    
T  23347864 acaatgttatttcttatatttaatatagtttgcattattgtttatttgaaattttagccaca 23347803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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