View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_high_29 (Length: 240)
Name: NF10103_high_29
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 31 - 224
Target Start/End: Complemental strand, 30402968 - 30402775
Alignment:
| Q |
31 |
accttcatacatattaaaagaagaccttaaactataggtgtgttgaataatttggtcctaattgaaagtcttcagccaattttttaaagaaatgaagaag |
130 |
Q |
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| T |
30402968 |
accttcatacatattaaaagaagaccttaaactataggtgtgttgaataatttggtcctaattgaaattcttaagccaattttttaaagaaatgaagaag |
30402869 |
T |
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| Q |
131 |
caaatgtttgggagatatcttccatcaacgtagacatagcaaatcatttttacatggtagtcattaattttatttgatgatacttagttgtaac |
224 |
Q |
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| T |
30402868 |
caaatgtttgggagatatcttccatcaacgtagacatagcaaatcatttttacatggtagtcattaattttatttgatgatacttagttgtaac |
30402775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 216
Target Start/End: Original strand, 30842718 - 30842855
Alignment:
| Q |
79 |
aatttggtcctaattgaaagtcttcagccaat-tttttaaagaaatgaag-aagcaaatgtttgggagatatcttccatcaacgtagacatagcaaatca |
176 |
Q |
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| T |
30842718 |
aatttggtcctaattgaaagtcttaaaccaatgttttttaagaaatggagaaaacaaa--tttctgagagatcttccatcaacaaagacatagcaaataa |
30842815 |
T |
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| Q |
177 |
tttttacatggtagtcattaattttatttgatgatactta |
216 |
Q |
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| T |
30842816 |
tatttgtgtggtagtcattaatatagtttgatgatactta |
30842855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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