View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10103_high_32 (Length: 237)

Name: NF10103_high_32
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10103_high_32
NF10103_high_32
[»] chr3 (5 HSPs)
chr3 (1-222)||(33385395-33385617)
chr3 (78-220)||(8714779-8714921)
chr3 (78-220)||(9066666-9066808)
chr3 (128-190)||(17630747-17630809)
chr3 (2-64)||(21022387-21022449)
[»] chr4 (3 HSPs)
chr4 (133-222)||(9355305-9355394)
chr4 (99-222)||(21414172-21414294)
chr4 (56-183)||(25228840-25228967)
[»] chr7 (5 HSPs)
chr7 (132-222)||(21914935-21915025)
chr7 (132-197)||(21896001-21896066)
chr7 (133-187)||(15964031-15964085)
chr7 (81-154)||(27222509-27222582)
chr7 (112-194)||(16758713-16758794)
[»] chr1 (6 HSPs)
chr1 (133-218)||(10916216-10916301)
chr1 (150-219)||(10014407-10014476)
chr1 (128-223)||(25428530-25428625)
chr1 (133-189)||(17621143-17621199)
chr1 (150-218)||(20421206-20421274)
chr1 (108-220)||(12086380-12086490)
[»] chr5 (1 HSPs)
chr5 (100-214)||(19412017-19412131)
[»] chr6 (1 HSPs)
chr6 (105-210)||(23904975-23905084)
[»] chr8 (1 HSPs)
chr8 (127-222)||(29452666-29452762)
[»] scaffold0010 (1 HSPs)
scaffold0010 (136-223)||(169505-169592)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33385395 - 33385617
Alignment:
Q  1 caacaacaccaggtgctaagaaggacttaaaaaatatcagaagcacttcagaatgagatcagaagcgctttagaatgagatcagaagcatatcatatgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  33385395 caacaacaccaggtgctaagaaggacttaaaaaatatcagaagcacttcagaatgagatcagaagcgctttagaatgagatcagaagcatatc--atgca 33385492  T
Q  101 ctacaatattgaagaacaagactcattaaggaaatatgagatcagaagctgatccatgtcaatc---ttaggaacacaattcttcaataaaaaggaactt 197  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||||    
T  33385493 ctacaatattgaagaacaagactcattaagaaaatatgagatcagaagttgatccatgtcaatctaattaggaacacaattcttcaataaaaaggaactt 33385592  T
Q  198 tagaatagacatcagaagcacttca 222  Q
    ||||||| |||||||||||| ||||    
T  33385593 tagaatatacatcagaagcatttca 33385617  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 220
Target Start/End: Complemental strand, 8714921 - 8714779
Alignment:
Q  78 agatcagaagcatatcatatgcactacaatattgaagaacaagactcattaaggaaatatgagatcagaagctgatccatgtcaatcttaggaacacaat 177  Q
    |||| |||||||| ||||  ||||||||| |||||||| | ||||| || |||| ||||||| |||| |   |||||||||||| ||  ||||||| |||    
T  8714921 agattagaagcatctcatgggcactacaaaattgaagagccagactgatgaagggaatatgatatcaaattttgatccatgtcattcggaggaacataat 8714822  T
Q  178 tcttcaataaaaaggaactttagaatagacatcagaagcactt 220  Q
    | ||||||||||| ||| || | |||||| | |||||||||||    
T  8714821 tattcaataaaaatgaaattcaaaatagataccagaagcactt 8714779  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 220
Target Start/End: Complemental strand, 9066808 - 9066666
Alignment:
Q  78 agatcagaagcatatcatatgcactacaatattgaagaacaagactcattaaggaaatatgagatcagaagctgatccatgtcaatcttaggaacacaat 177  Q
    |||| |||||||| ||||  ||||||||| |||||||| | ||||| || |||| ||||||| |||| |   |||||||||||| ||  ||||||| |||    
T  9066808 agattagaagcatctcatgggcactacaaaattgaagagccagactgatgaagggaatatgatatcaaattttgatccatgtcattcggaggaacataat 9066709  T
Q  178 tcttcaataaaaaggaactttagaatagacatcagaagcactt 220  Q
    | ||||||||||| ||| || | |||||| | |||||||||||    
T  9066708 tattcaataaaaatgaaattcaaaatagataccagaagcactt 9066666  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 17630747 - 17630809
Alignment:
Q  128 aaggaaatatgagatcagaagctgatccatgtcaatcttaggaacacaattcttcaataaaaa 190  Q
    ||||||||||||||||| ||||  |||||||||||| | | ||||| ||||||||||||||||    
T  17630747 aaggaaatatgagatcataagcaaatccatgtcaatttcaagaacaaaattcttcaataaaaa 17630809  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 21022387 - 21022449
Alignment:
Q  2 aacaacaccaggtgctaagaaggacttaaaaaatatcagaagcacttcagaatgagatcagaa 64  Q
    |||||||||| ||| | |||||||||| ||||  |||||||| ||||||||||||||||||||    
T  21022387 aacaacaccaagtgttgagaaggacttcaaaatgatcagaagtacttcagaatgagatcagaa 21022449  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 9355394 - 9355305
Alignment:
Q  133 aatatgagatcagaagctgatccatgtcaatcttaggaacacaattcttcaataaaaaggaactttagaatagacatcagaagcacttca 222  Q
    |||||||||||| ||| ||||||| |||||||||| ||||| |||||||||||||||| ||||||||||||||||   ||||||||||||    
T  9355394 aatatgagatcataagttgatccaagtcaatcttatgaacaaaattcttcaataaaaaagaactttagaatagactctagaagcacttca 9355305  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 21414172 - 21414294
Alignment:
Q  99 cactacaatattgaagaacaagactcattaaggaaatatgagatcagaagctgatccatgtcaatcttaggaacacaattcttcaataaaaaggaacttt 198  Q
    |||||||| |||||||||||||| | | ||| ||| |||||||||| ||| || ||||||||||||| |  |||| ||||||| |||||||| ||| |||    
T  21414172 cactacaaaattgaagaacaagattaactaacgaa-tatgagatcaaaagttggtccatgtcaatctcatcaacaaaattcttaaataaaaaagaaattt 21414270  T
Q  199 agaatagacatcagaagcacttca 222  Q
    |  | |||||||||||||||||||    
T  21414271 aataaagacatcagaagcacttca 21414294  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 25228840 - 25228967
Alignment:
Q  56 agatcagaagcgctttagaatgagatcagaagcatatcatatgcactacaatattgaagaacaagactcattaaggaaatatgagatcagaagctgatcc 155  Q
    |||||| |||| ||| |||||||||||| |||||| ||||  |||| | || ||||||||| || | | | ||||||||| |||||||| ||| | ||||    
T  25228840 agatcataagctcttgagaatgagatcaaaagcatctcatgggcacgagaaaattgaagaaaaatattgactaaggaaatgtgagatcataagtttatcc 25228939  T
Q  156 atgtcaatcttaggaacacaattcttca 183  Q
    ||| |||||||| ||||| | |||||||    
T  25228940 atgacaatcttatgaacaaagttcttca 25228967  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 21915025 - 21914935
Alignment:
Q  132 aaatatgagatcagaagctgatccatgtcaatcttaggaacacaattcttcaataaaaaggaactttagaatagacatcagaagcacttca 222  Q
    |||||||||||||||||||||||||| |||||||||  |||| |||||||||||||||| |||||| | | || |||||||| ||||||||    
T  21915025 aaatatgagatcagaagctgatccatttcaatcttaataacaaaattcttcaataaaaaagaacttcatattaaacatcagacgcacttca 21914935  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 21896066 - 21896001
Alignment:
Q  132 aaatatgagatcagaagctgatccatgtcaatcttaggaacacaattcttcaataaaaaggaactt 197  Q
    ||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||| ||||||    
T  21896066 aaatatgagatcagaagctgatccatgtcaatcttattaacaaaattcttcaataaaaaagaactt 21896001  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 15964085 - 15964031
Alignment:
Q  133 aatatgagatcagaagctgatccatgtcaatcttaggaacacaattcttcaataa 187  Q
    |||||||||||||||||| |||||||||||||||| ||||| |||||||||||||    
T  15964085 aatatgagatcagaagcttatccatgtcaatcttatgaacaaaattcttcaataa 15964031  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 27222509 - 27222582
Alignment:
Q  81 tcagaagcatatcatatgcactacaatattgaagaacaagactcattaaggaaatatgagatcagaagctgatc 154  Q
    |||||| ||| |||| ||||||||||||||||||||||| | | |  ||||||||||||||||||||| |||||    
T  27222509 tcagaatcatctcatgtgcactacaatattgaagaacaaaatttaccaaggaaatatgagatcagaagttgatc 27222582  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 16758794 - 16758713
Alignment:
Q  112 aagaacaagactcattaaggaaatatgagatcagaagctgatccatgtcaatcttaggaacacaattcttcaataaaaaggaa 194  Q
    |||||||||| | | ||||||| |||||||||||||| |||||||| ||||||| | |||   ||||||||||||||||||||    
T  16758794 aagaacaagattgactaaggaa-tatgagatcagaagttgatccatatcaatctcatgaattaaattcttcaataaaaaggaa 16758713  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 10916216 - 10916301
Alignment:
Q  133 aatatgagatcagaagctgatccatgtcaatcttaggaacacaattcttcaataaaaaggaactttagaatagacatcagaagcac 218  Q
    ||||||||||  |||| |||||||||||||||||| ||||| |||||||||||||||    |||||||||||||||| ||||||||    
T  10916216 aatatgagattcgaagttgatccatgtcaatcttatgaacaaaattcttcaataaaagaagactttagaatagacataagaagcac 10916301  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 10014476 - 10014407
Alignment:
Q  150 tgatccatgtcaatcttaggaacacaattcttcaataaaaaggaactttagaatagacatcagaagcact 219  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||| |  |||||||| ||| |||||    
T  10014476 tgatccatgtcaatcttaggaactcaattcttaaataaaaaggaacttcatgatagacataagatgcact 10014407  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 223
Target Start/End: Complemental strand, 25428625 - 25428530
Alignment:
Q  128 aaggaaatatgagatcagaagctgatccatgtcaatcttaggaacacaattcttcaataaaaaggaactttagaatagacatcagaagcacttcat 223  Q
    |||| |||||||||||||||| ||||| || ||||| | ||||||| |||||||||||||||   ||||| | | | |||||||||||||||||||    
T  25428625 aagggaatatgagatcagaagttgatcaatttcaatataaggaacaaaattcttcaataaaattaaacttcaaagttgacatcagaagcacttcat 25428530  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 17621143 - 17621199
Alignment:
Q  133 aatatgagatcagaagctgatccatgtcaatcttaggaacacaattcttcaataaaa 189  Q
    |||||||||||| ||| ||||||||||||||||||  |||| |||||||||||||||    
T  17621143 aatatgagatcaaaagttgatccatgtcaatcttataaacaaaattcttcaataaaa 17621199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 20421274 - 20421206
Alignment:
Q  150 tgatccatgtcaatcttaggaacacaattcttcaataaaaaggaactttagaatagacatcagaagcac 218  Q
    |||||||||||||||| ||||||||||||||| ||| ||||||||||| |  ||| |||| ||||||||    
T  20421274 tgatccatgtcaatctaaggaacacaattcttaaattaaaaggaacttcatgatatacataagaagcac 20421206  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 12086490 - 12086380
Alignment:
Q  108 attgaagaacaagactcattaaggaaatatgagatcagaagctgatccatgtcaatcttaggaacacaattcttcaataaaaaggaactttagaatagac 207  Q
    |||||||||||| | | || |||||| ||||||||||||||||||| ||||| |||||||  |||| | ||||  |||||| | |||||| | |||||||    
T  12086490 attgaagaacaaaattgatcaaggaa-tatgagatcagaagctgattcatgtaaatctta-taacaaatttctcaaataaagaagaacttcataatagac 12086393  T
Q  208 atcagaagcactt 220  Q
    || ||||||||||    
T  12086392 attagaagcactt 12086380  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 19412131 - 19412017
Alignment:
Q  100 actacaatattgaagaacaagactcattaaggaaatatgagatcagaagctgatccatgtcaatcttaggaacacaattcttcaataaaaaggaacttta 199  Q
    |||||||||||||||||||||| | | |||||||||| ||||| ||||| | ||  ||| ||||||||  |||| |||||||||||||||| |||||| |    
T  19412131 actacaatattgaagaacaagattgagtaaggaaatacgagattagaagtttatatatgccaatcttaaaaacaaaattcttcaataaaaaagaacttca 19412032  T
Q  200 gaatagacatcagaa 214  Q
     |||| ||| |||||    
T  19412031 aaatatacaccagaa 19412017  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 23904975 - 23905084
Alignment:
Q  105 aatattgaagaacaagactcatt----aaggaaatatgagatcagaagctgatccatgtcaatcttaggaacacaattcttcaataaaaaggaactttag 200  Q
    ||||||||||||||||| | |||    ||| ||||||||||| | ||| |||||||||| ||| ||||||||| | |||||||||  |||| ||||| ||    
T  23904975 aatattgaagaacaagattaattgaccaagaaaatatgagattataagttgatccatgttaattttaggaacaaatttcttcaatggaaagaaacttcag 23905074  T
Q  201 aatagacatc 210  Q
    ||||||||||    
T  23905075 aatagacatc 23905084  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 29452666 - 29452762
Alignment:
Q  127 taaggaaatatgagatcagaagctgatc-catgtcaatcttaggaacacaattcttcaataaaaaggaactttagaatagacatcagaagcacttca 222  Q
    |||| |||||||||||||||||  |||| || || | ||| | ||||| ||||||| ||||||||||||| ||||| | ||||||| ||||||||||    
T  29452666 taagaaaatatgagatcagaagtggatctcacgttagtctgatgaacaaaattctttaataaaaaggaacattagacttgacatcaaaagcacttca 29452762  T

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Target: scaffold0010 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 169592 - 169505
Alignment:
Q  136 atgagatcagaagctgatccatgtcaatcttaggaacacaattcttcaataaaaaggaactttagaatagacatcagaagcacttcat 223  Q
    ||||||| |||||  ||||||||||||| | | ||| | |||||||||||||||| |||||| || | | ||||||||| ||||||||    
T  169592 atgagataagaagtcgatccatgtcaatttcatgaataaaattcttcaataaaaaagaacttcagtaaaaacatcagaaacacttcat 169505  T

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