View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_high_33 (Length: 230)
Name: NF10103_high_33
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 39836318 - 39836120
Alignment:
| Q |
22 |
aaaggaggagtgtgtaaaagtaggaggaatataaaatcaagaagaaaaacaaagttctaaactnnnnnnngctctctttctcataacaagcaaccatcaa |
121 |
Q |
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| T |
39836318 |
aaaggaggagtgtgtaaaagtaggaggaatataaaatcaagaagaaaaacaaagttctaaactaaaaaaagctctctttctcataacaagcaaccatcaa |
39836219 |
T |
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| Q |
122 |
attaagtcttatagctgaaatttcattctcataaaaaagttagctttatttctggtccataattcaaccttctctcctcactcaccttttcttctctct |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39836218 |
attaagtcttatagctgaaatttcattctcataaaaaagttagctttatttctggtccataattcaaccttctctcctcactcaccttttcttctctct |
39836120 |
T |
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