View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_high_34 (Length: 229)
Name: NF10103_high_34
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_high_34 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 33692204 - 33692071
Alignment:
| Q |
96 |
tatatatattatgtatgtttttccatttcttgtgtgatagtaaaaaagtttaattttcatcggtcattgattattaatatatgtttcaccgtttaaaaat |
195 |
Q |
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| T |
33692204 |
tatatatattatgaatgtttttccatttcttgtgtgatagtaaaaaagtttaattttcatcggtcattgattattaatatatgtttcaccgtttaaaaat |
33692105 |
T |
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| Q |
196 |
tatcatttattcatgtttattatacaattttggt |
229 |
Q |
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| T |
33692104 |
taacatttattcatgtttattatacaattttggt |
33692071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 33692339 - 33692242
Alignment:
| Q |
7 |
ggtgcttatggtgttagtctttttgtaattcaacagtgttaaaatcacattatggttttggagctatgtaatacttgtctttttgtgtgtatatatat |
104 |
Q |
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| T |
33692339 |
ggtgcttatggtgttggtctttttgtaattgaacagtgttaaaatcacattatggttttggagctatgtaatacttgtctttttgtgtgtgtatatat |
33692242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 33685127 - 33685060
Alignment:
| Q |
7 |
ggtgcttatggtgttagtctttttgtaattcaacagtgttaaaatcacattatggttttggagctatg |
74 |
Q |
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| T |
33685127 |
ggtgcttatgatgttggtctttttgtatttgaatagtgttaaattcacactatggttttggagctatg |
33685060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 33673930 - 33673861
Alignment:
| Q |
7 |
ggtgcttatggtgttagtctttttgtaattcaacagtgttaaaatcacattatggttttggagctatgtaa |
77 |
Q |
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| T |
33673930 |
ggtgcttatgatgttgctctttttgtaatg-aatagtgtttaattcacactatggttttggagctatgtaa |
33673861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 89587 - 89718
Alignment:
| Q |
7 |
ggtgcttatggtgttagtctttttgtaattcaacagtgttaaaatcacattatggttttggagctatgtaatacttgtctttttgtgtgtatatatatta |
106 |
Q |
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| T |
89587 |
ggtgcttatggtgttggtttgtttgtaattaaatagtgtttaaatcacattatggttttggagctattgaatatttgtctctt----tgtatatatctta |
89682 |
T |
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| Q |
107 |
tgtatgtttttcca-tttcttgtg-tgatagtaaaa |
140 |
Q |
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| T |
89683 |
tgtatgtttttccattttcttgtgttgatagtaaaa |
89718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 110807 - 110724
Alignment:
| Q |
7 |
ggtgcttatggtgttagtctttttgtaattcaacagtgttaaaatcacattatggttttggagctatgtaatacttgtctttttg |
91 |
Q |
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| T |
110807 |
ggtgcttatggtgttagtctttt-gtaattgaatagtgtttaaatttcactatggttttgtagctgtgtaatacttgtatttttg |
110724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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