View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_high_6 (Length: 407)
Name: NF10103_high_6
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 5e-66; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 72 - 227
Target Start/End: Complemental strand, 28961315 - 28961159
Alignment:
| Q |
72 |
tattgggaagggtgggtggtttatggagtatagagaggaccacatgggtcaagaagactccctcagatggggattttaatgaagaacttacc-nnnnnnn |
170 |
Q |
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| T |
28961315 |
tattgggaagggtgggtggtttatggagtatagagaggaccacatgggtcaagaagactccctcagatggggattttaatgaagaacttaccattttttt |
28961216 |
T |
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| Q |
171 |
atgaatgaattaatattaatcacctattgattacattttccattttatgttttgctt |
227 |
Q |
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| T |
28961215 |
atgaatgaattaatattaatcacctattgattacattttccattttatgttttgctt |
28961159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 257 - 401
Target Start/End: Complemental strand, 28961159 - 28961013
Alignment:
| Q |
257 |
ttgtgacctatctatcactcaagtgaaataaaaataaaattttaatcattgaaaaatattagattactagaattgtact--cagannnnnnnagcaagta |
354 |
Q |
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| T |
28961159 |
ttgtgacctatctatcactcaagtgaaataaaaataacattttaatcattgaaaaatattacattactagaattgtactgatagatttttttaacaagta |
28961060 |
T |
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| Q |
355 |
taataaaattgtatcgaaataataaaatttataaaatttcttctcac |
401 |
Q |
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| T |
28961059 |
tactaaaattgtatcgaaataataaaatttataaaatttcttttcac |
28961013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 29001009 - 29000924
Alignment:
| Q |
72 |
tattgggaagggtgggtggtttatggagtatagagaggaccacatgggtcaagaagactccctcagatggggattttaatgaagaa |
157 |
Q |
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| T |
29001009 |
tattgggaagggtgggtggtttatagagtatagagaggaccacatgagtcaagaagactccctcaagtggggatttgaatgaagaa |
29000924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 28961338 - 28961304
Alignment:
| Q |
18 |
agagttaacataaattccataaatattgggaaggg |
52 |
Q |
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| T |
28961338 |
agagttaacataaattccataaatattgggaaggg |
28961304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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