View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10103_low_10 (Length: 454)

Name: NF10103_low_10
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10103_low_10
NF10103_low_10
[»] chr2 (2 HSPs)
chr2 (7-356)||(3915199-3915552)
chr2 (352-447)||(3915585-3915680)
[»] chr3 (11 HSPs)
chr3 (365-442)||(31683353-31683430)
chr3 (76-129)||(31683840-31683893)
chr3 (76-129)||(31894539-31894592)
chr3 (76-129)||(31899123-31899176)
chr3 (76-129)||(31914832-31914885)
chr3 (76-129)||(31948480-31948533)
chr3 (365-442)||(31895002-31895079)
chr3 (365-442)||(31899586-31899663)
chr3 (365-442)||(31915295-31915372)
chr3 (365-442)||(31948943-31949020)
chr3 (365-417)||(52652242-52652294)


Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 356
Target Start/End: Original strand, 3915199 - 3915552
Alignment:
Q  7 ggaacaaatcgtggtttggtcaaaatagtggaactaaaactgcatttaagtcaataatatttcaagtagttatcttacttgcaagtgtctacatctgcat 106  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3915199 ggaacaaatcgtggtttggtcaaaatagtgggactaaaactgcatttaagccaataatatttcaagtagttatcttacttgcaagtgtctacatctgcat 3915298  T
Q  107 gtgttttaca----attcctaaaaatgttgtcgttttatgtattgagtttctaaactggaacgtgcttctaaagaaatgataggaacttcatccacaaga 202  Q
    ||||||||||    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3915299 gtgttttacatacaattcctaaaaatgttgtcgttttatgtattgagttcctaaactggaacgtgcttctaaagaaatgataggaacttcatccacaaga 3915398  T
Q  203 aacaggctaccagttaaacctgcatctggagatacaacaaggttggcaaaaccacaagaacatgaaacaaacccacattccagtcacaacacaagttact 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3915399 aacaggctaccagttaaacctgcatctggagatacaacaaggttggcaaaaccacaagaacatgaaacaaacccacattccagtcacaacacaagttact 3915498  T
Q  303 gatgatcaagaaatattatttgaaacatgcatggtatctaaggcatcacaattg 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3915499 gatgatcaagaaatattatttgaaacatgcatggtatctaaggcatcacaattg 3915552  T

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Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 352 - 447
Target Start/End: Original strand, 3915585 - 3915680
Alignment:
Q  352 aattgagggatgtgaatcattggttgtacttccagatgatttgctagatggattacccattcttaaggaatttaaattgatcaactgttcttctct 447  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3915585 aattgagggatgtgaatcattggttgtccatccagatgatttgctagatggattacccattcttaaggaatttaaattgatcaactgtccttctct 3915680  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 442
Target Start/End: Complemental strand, 31683430 - 31683353
Alignment:
Q  365 gaatcattggttgtacttccagatgatttgctagatggattacccattcttaaggaatttaaattgatcaactgttct 442  Q
    |||||||||| ||| || |||||||||||||||||||||| | ||| |||||| ||||| |||||||| || ||||||    
T  31683430 gaatcattggatgtcctcccagatgatttgctagatggatcaaccagtcttaaagaattgaaattgatgaattgttct 31683353  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 31683893 - 31683840
Alignment:
Q  76 ttatcttacttgcaagtgtctacatctgcatgtgttttacaattcctaaaaatg 129  Q
    |||||||||||||||||||| |||||||| | ||||| ||||||||||||||||    
T  31683893 ttatcttacttgcaagtgtccacatctgcttatgtttcacaattcctaaaaatg 31683840  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 31894539 - 31894592
Alignment:
Q  76 ttatcttacttgcaagtgtctacatctgcatgtgttttacaattcctaaaaatg 129  Q
    |||||||||||||||||||| |||||||| | ||||| ||||||||||||||||    
T  31894539 ttatcttacttgcaagtgtccacatctgcttatgtttcacaattcctaaaaatg 31894592  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 31899123 - 31899176
Alignment:
Q  76 ttatcttacttgcaagtgtctacatctgcatgtgttttacaattcctaaaaatg 129  Q
    |||||||||||||||||||| |||||||| | ||||| ||||||||||||||||    
T  31899123 ttatcttacttgcaagtgtccacatctgcttatgtttcacaattcctaaaaatg 31899176  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 31914832 - 31914885
Alignment:
Q  76 ttatcttacttgcaagtgtctacatctgcatgtgttttacaattcctaaaaatg 129  Q
    |||||||||||||||||||| |||||||| | ||||| ||||||||||||||||    
T  31914832 ttatcttacttgcaagtgtccacatctgcttatgtttcacaattcctaaaaatg 31914885  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 31948480 - 31948533
Alignment:
Q  76 ttatcttacttgcaagtgtctacatctgcatgtgttttacaattcctaaaaatg 129  Q
    |||||||||||||||||||| |||||||| | ||||| ||||||||||||||||    
T  31948480 ttatcttacttgcaagtgtccacatctgcttatgtttcacaattcctaaaaatg 31948533  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 442
Target Start/End: Original strand, 31895002 - 31895079
Alignment:
Q  365 gaatcattggttgtacttccagatgatttgctagatggattacccattcttaaggaatttaaattgatcaactgttct 442  Q
    |||||||||| ||| || ||||||| |||||||||||||| | ||| |||||| ||||| |||||||| || ||||||    
T  31895002 gaatcattggatgtcctcccagatggtttgctagatggatcaaccagtcttaaagaattgaaattgatgaattgttct 31895079  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 442
Target Start/End: Original strand, 31899586 - 31899663
Alignment:
Q  365 gaatcattggttgtacttccagatgatttgctagatggattacccattcttaaggaatttaaattgatcaactgttct 442  Q
    |||||||||| ||| || ||||||| |||||||||||||| | ||| |||||| ||||| |||||||| || ||||||    
T  31899586 gaatcattggatgtcctcccagatggtttgctagatggatcaaccagtcttaaagaattgaaattgatgaattgttct 31899663  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 442
Target Start/End: Original strand, 31915295 - 31915372
Alignment:
Q  365 gaatcattggttgtacttccagatgatttgctagatggattacccattcttaaggaatttaaattgatcaactgttct 442  Q
    |||||||||| ||| || ||||||| |||||||||||||| | ||| |||||| ||||| |||||||| || ||||||    
T  31915295 gaatcattggatgtcctcccagatggtttgctagatggatcaaccagtcttaaagaattgaaattgatgaattgttct 31915372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 442
Target Start/End: Original strand, 31948943 - 31949020
Alignment:
Q  365 gaatcattggttgtacttccagatgatttgctagatggattacccattcttaaggaatttaaattgatcaactgttct 442  Q
    |||||||||| ||| || ||||||| |||||||||||||| | ||| |||||| ||||| |||||||| || ||||||    
T  31948943 gaatcattggatgtcctcccagatggtttgctagatggatcaaccagtcttaaagaattgaaattgatgaattgttct 31949020  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 417
Target Start/End: Complemental strand, 52652294 - 52652242
Alignment:
Q  365 gaatcattggttgtacttccagatgatttgctagatggattacccattcttaa 417  Q
    |||||||||| ||| |||||||||||||| ||||| |||||||||| ||||||    
T  52652294 gaatcattggatgtccttccagatgatttcctagacggattacccaatcttaa 52652242  T

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