View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_11 (Length: 450)
Name: NF10103_low_11
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 4661575 - 4661869
Alignment:
| Q |
15 |
atataggaatcagagaaggtagcattggctgagtcaacaggtttggaccagaagcaaataaataactggttcataaatcaaaggaagaggcactggaaac |
114 |
Q |
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| T |
4661575 |
atataggaatcagagaaggtagcattggctgagtcaacaggtttggaccagaagcaaataaataactggttcataaatcaaaggaagaggcactggaaac |
4661674 |
T |
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| Q |
115 |
catcagaagacatgcagtttatggtgatggatggactgcatccacagagtgcagctctttatatggatggtcattacatggctgatggtccctaccgttt |
214 |
Q |
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| T |
4661675 |
catcagaagacatgcagtttatggtgatggatggactgcatccacagagtgcagctctttatatggatggtcattacatggctgatggtccctaccgttt |
4661774 |
T |
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| Q |
215 |
agggccatgattatgatatatgaagcgttgacactgacacatcgacaccaatgtcggcgtggtggtcggacttatcttcaatattatgaccactt |
309 |
Q |
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| T |
4661775 |
agggccatgattatgatatatgaagcgttgacactggcacatcgacaccaatgtcggcgtggtggtcggacttatcttcaatattatgaccactt |
4661869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 330 - 428
Target Start/End: Original strand, 4661905 - 4662003
Alignment:
| Q |
330 |
gtttaagtggaaggtgaaacaatcaaagactgtttaaactgtatcagtcagcattatatttacatatagttctagtttcaaagtattatgacaagcata |
428 |
Q |
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| T |
4661905 |
gtttaagtggaaggtgaaacaatcaaagactgtttaaactgtatcagtcagcattatatttatatatagttctagtttcaaagtattatgacaagcata |
4662003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 37489300 - 37489242
Alignment:
| Q |
66 |
aagcaaataaataactggttcataaatcaaaggaagaggcactggaaaccatcagaaga |
124 |
Q |
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| T |
37489300 |
aagcagataaataattggttcatcaatcagaggaaaagacactggaaaccatctgaaga |
37489242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 8791989 - 8791891
Alignment:
| Q |
48 |
tcaacaggtttggaccagaagcaaataaataactggttcataaatcaaaggaagaggcactggaaaccatcagaagacatgcagtttatggtgatggat |
146 |
Q |
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| T |
8791989 |
tcaacaggtcttgatcagaagcaaataaacaactggtttattaatcaaaggaaacggcactggaagccttcagaggacatgcagtttgtggtgatggat |
8791891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 8780481 - 8780396
Alignment:
| Q |
63 |
cagaagcaaataaataactggttcat--aaatcaaaggaagaggcactggaaaccatcagaagacatgcagtttatggtgatggat |
146 |
Q |
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| T |
8780481 |
cagaagcaaataaacaactggtttattaaaatcaaagaaaacggcactggaagccttcagaggacatgcagtttgtggtgatggat |
8780396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 48282138 - 48282094
Alignment:
| Q |
66 |
aagcaaataaataactggttcataaatcaaaggaagaggcactgg |
110 |
Q |
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| T |
48282138 |
aagcaaataaataactggtttattaatcaaaggaaaaggaactgg |
48282094 |
T |
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