View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10103_low_13 (Length: 445)

Name: NF10103_low_13
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10103_low_13
NF10103_low_13
[»] chr3 (9 HSPs)
chr3 (13-431)||(26654317-26654735)
chr3 (149-378)||(26648453-26648687)
chr3 (145-335)||(20014777-20014967)
chr3 (193-321)||(20032898-20033024)
chr3 (194-319)||(20033036-20033161)
chr3 (182-318)||(20006865-20007001)
chr3 (182-335)||(17115433-17115582)
chr3 (107-234)||(19990518-19990645)
chr3 (137-293)||(19952471-19952627)
[»] chr5 (2 HSPs)
chr5 (145-376)||(26353460-26353696)
chr5 (145-378)||(9816386-9816621)
[»] chr1 (1 HSPs)
chr1 (141-330)||(1718478-1718667)
[»] chr7 (2 HSPs)
chr7 (379-422)||(13789574-13789617)
chr7 (377-422)||(8356288-8356333)


Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Original strand, 26654317 - 26654735
Alignment:
Q  13 agcacggaagtctagtaacagagcctttttatctgagactcaaggtgaaagtcatagctatgctttcaaaaacaaagcaactgttgtgcagcattctgat 112  Q
    |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  26654317 agcatggaagtctaatgacagagcctttttatctgagactcaaggtgaaagtcatagctatgctttcaaaaacaaagtaactgttgtgcaacattctgat 26654416  T
Q  113 atggctgaaggagctaaagaagttgttgaagaaagaaaagaaagagatgatgaagttgtgattttattgaaagagcaaagcttgaagaatcaagaggaac 212  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  26654417 atggctgaaggagctaaagaaattgttgaagaaagaaaagaaagagatgatgaagttgtgattttattgaaagagcatagcttgaagaatcaagaggaaa 26654516  T
Q  213 tgacacgtctagcaagacaacaagaagagatattacgattaatggatttgagggagaaaagagatgaagagttgaggcaacttctcactagtgttctaag 312  Q
    || |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26654517 tggcacgtctagcaagacaacaagaagagatgttacgtttaatggatttgagggagaaaagagatgaagagttgaggcaacttctcactagtgttctaag 26654616  T
Q  313 gaatcaacaaccaccatcatcttaaaactttatatttgtttttgaattctcttcatgaaactcatgtgttaggagtcccacgtcgggtaaatgaaagtgc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26654617 gaatcaacaaccaccatcatcttaaaactttatatttgtttttgaattctcttcatgaaactcatgtgttaggagtcccacatcgggtaaatgaaagtgc 26654716  T
Q  413 ttgatgtggtggcttaagt 431  Q
    |||||||||||||||||||    
T  26654717 ttgatgtggtggcttaagt 26654735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 149 - 378
Target Start/End: Original strand, 26648453 - 26648687
Alignment:
Q  149 aaagaaagagatgatgaagttgtgattttattgaaagagcaaagcttgaagaatcaagaggaactgacacgtctagcaagacaacaagaagagatattac 248  Q
    |||||||| ||| ||||||||||| |||| || ||||||| |  ||||||||| ||||||||||| |  || || ||||||||||||||| |||| || |    
T  26648453 aaagaaagtgatcatgaagttgtggttttgttaaaagagctatacttgaagaaccaagaggaactcaggcgcctggcaagacaacaagaaaagatgtttc 26648552  T
Q  249 gattaatggatttgagggagaaaagagatgaagagttgaggcaacttctcactagtgttctaaggaatcaacaaccaccatca------tcttaaaactt 342  Q
      ||||| ||||||| |||||| || |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||      |||||||||||    
T  26648553 agttaatagatttgaaggagaagagggatgaagagttgaggcaactcctcactagtgttctaaagaatcaacaaccaccatcatctttttcttaaaactt 26648652  T
Q  343 tatatttgtttttgaattctcttcatgaaactcatg 378  Q
    || |||||||||||||||||| || |||||||||||    
T  26648653 ta-atttgtttttgaattctcctcctgaaactcatg 26648687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 145 - 335
Target Start/End: Complemental strand, 20014967 - 20014777
Alignment:
Q  145 aagaaaagaaagagatgatgaagttgtgattttattgaaagagcaaagcttgaagaatcaagaggaactgacacgtctagcaagacaacaagaagagata 244  Q
    |||||||||||| ||| |||||| | || |||| || |||||||||  ||||||||||||||||||||| |  | ||| |||||||||||||| |||||     
T  20014967 aagaaaagaaagtgatcatgaagctttggttttcttaaaagagcaatacttgaagaatcaagaggaactcaggcttctggcaagacaacaagatgagatg 20014868  T
Q  245 ttacgattaatggatttgagggagaaaagagatgaagagttgaggcaacttctcactagtgttctaaggaatcaacaaccaccatcatctt 335  Q
    |||||  |||||||||||| |  ||| || |||||||||||||| ||||||||||||||| |||||| |||||||| ||||||||| ||||    
T  20014867 ttacggctaatggatttgaagatgaagagggatgaagagttgagacaacttctcactagttttctaaagaatcaaccaccaccatcttctt 20014777  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 193 - 321
Target Start/End: Complemental strand, 20033024 - 20032898
Alignment:
Q  193 cttgaagaatcaagaggaactgacacgtctagcaagacaacaagaagagatattacgattaatggatttgagggagaaaagagatgaagagttgaggcaa 292  Q
    ||||||||||||||||||||| |  | | ||||||||||||| |||||||| || |||||| ||  |||||||||||| || ||||||||||||||||||    
T  20033024 cttgaagaatcaagaggaactcaagcatgtagcaagacaacaggaagagatcttgcgattattgtctttgagggagaagagggatgaagagttgaggcaa 20032925  T
Q  293 cttctcactagtgttctaaggaatcaaca 321  Q
     | ||  ||||||||||||||||||||||    
T  20032924 atcct--ctagtgttctaaggaatcaaca 20032898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 319
Target Start/End: Complemental strand, 20033161 - 20033036
Alignment:
Q  194 ttgaagaatcaagaggaactgacacgtctagcaagacaacaagaagagatattacgattaatggatttgagggagaaaagagatgaagagttgaggcaac 293  Q
    ||||||||||||| ||||||  ||||| ||| | | ||||| |||||||| || || ||| ||| |||||||||||| ||||||||||||||||||||||    
T  20033161 ttgaagaatcaaggggaactcgcacgtgtagtacgccaacaggaagagatcttgcggttattggctttgagggagaagagagatgaagagttgaggcaac 20033062  T
Q  294 ttctcactagtgttctaaggaatcaa 319  Q
    | || |||||||| ||||||||||||    
T  20033061 tccttactagtgtcctaaggaatcaa 20033036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 182 - 318
Target Start/End: Complemental strand, 20007001 - 20006865
Alignment:
Q  182 aaagagcaaagcttgaagaatcaagaggaactgacacgtctagcaagacaacaagaagagatattacgattaatggatttgagggagaaaagagatgaag 281  Q
    |||||||||  ||||||||||||||||||||| || | ||| |||||||||||||| ||||| |||    |||||| |||| ||||||| || |||||||    
T  20007001 aaagagcaatacttgaagaatcaagaggaactcacgcatctggcaagacaacaagaggagatgttagaggtaatggctttgtgggagaagagggatgaag 20006902  T
Q  282 agttgaggcaacttctcactagtgttctaaggaatca 318  Q
    ||||||| || || || ||||||||||||||||||||    
T  20006901 agttgagacacctccttactagtgttctaaggaatca 20006865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 335
Target Start/End: Original strand, 17115433 - 17115582
Alignment:
Q  182 aaagagcaaagcttgaagaatcaagaggaactgacacgtctagcaagacaacaagaagagatattacgattaatggatttgagggagaaaagagatgaag 281  Q
    |||||||||  ||||||||||||||| ||||| |  ||||| ||||||||||| |||| ||| || |  ||||||| |||||  ||||| || | |||||    
T  17115433 aaagagcaatacttgaagaatcaagacgaactcaggcgtctggcaagacaacatgaagtgatgtttcagttaatggctttgaaagagaagaggggtgaag 17115532  T
Q  282 agttgaggcaacttctcactagtgttctaaggaatcaacaaccaccatcatctt 335  Q
    | |    |||||| ||||||||||||||||||||||| |||| |||||||||||    
T  17115533 aat----gcaactcctcactagtgttctaaggaatcagcaacaaccatcatctt 17115582  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 234
Target Start/End: Original strand, 19990518 - 19990645
Alignment:
Q  107 tctgatatggctgaaggagctaaagaagttgttgaagaaagaaaagaaagagatgatgaagttgtgattttattgaaagagcaaagcttgaagaatcaag 206  Q
    ||||||||||||| |||||||||| ||    ||  ||||||||||||||| |||||||| ||  |  |||| || |||||| ||  ||||||||||||||    
T  19990518 tctgatatggctgcaggagctaaacaaacacttatagaaagaaaagaaagtgatgatgatgtattagttttcttaaaagagaaatacttgaagaatcaag 19990617  T
Q  207 aggaactgacacgtctagcaagacaaca 234  Q
    ||||||| |||||||| |||||| ||||    
T  19990618 aggaactcacacgtctggcaagagaaca 19990645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 293
Target Start/End: Original strand, 19952471 - 19952627
Alignment:
Q  137 gttgaagaaagaaaagaaagagatgatgaagttgtgattttattgaaagagcaaagcttgaagaatcaagaggaactgacacgtctagcaagacaacaag 236  Q
    |||||||||| | ||||||| ||| ||||||| ||| |||| |  ||||| |||  |||||||| |||||| |||||  | ||  | | |||||| || |    
T  19952471 gttgaagaaatagaagaaagggatcatgaagtcgtggttttgtcaaaagaccaatacttgaagattcaagaagaactagcgcgcttgggaagacagcagg 19952570  T
Q  237 aagagatattacgattaatggatttgagggagaaaagagatgaagagttgaggcaac 293  Q
    | ||||| ||||| ||||||| ||||||||| || | ||||||||||||||||||||    
T  19952571 aggagatcttacggttaatggctttgagggaaaagaaagatgaagagttgaggcaac 19952627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 145 - 376
Target Start/End: Complemental strand, 26353696 - 26353460
Alignment:
Q  145 aagaaaagaaagagatgatgaagttgtgattttattgaaagagcaaagcttgaagaatcaagaggaactgacacgtctagcaagacaacaagaagagata 244  Q
    |||||||||||| ||| ||||| ||||| |||  || |||||||||  ||||||| ||||||||||||| |  ||||| ||||||||||| ||||||||     
T  26353696 aagaaaagaaagtgatcatgaacttgtggtttggttaaaagagcaatacttgaaggatcaagaggaactcaggcgtctggcaagacaacaggaagagatg 26353597  T
Q  245 ttacgattaatggatttgagggagaaaagagatgaagagttgaggcaacttctcactagtgttctaaggaatcaacaaccaccatca------tcttaaa 338  Q
    ||||||||||| |||| || |||||| || |||||||||||||||||||| |||||||||||||| | |||||||||||||||||||      |||||||    
T  26353596 ttacgattaatagattcgaaggagaagagggatgaagagttgaggcaactcctcactagtgttctgaagaatcaacaaccaccatcatcttcttcttaaa 26353497  T
Q  339 actttatatttgtttttgaattctcttcatgaaactca 376  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  26353496 actttat-tttgtttttgaattcccttcatgaaactca 26353460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 145 - 378
Target Start/End: Original strand, 9816386 - 9816621
Alignment:
Q  145 aagaaaagaaagagatgatgaagttgtgattttattgaaagagcaaagcttgaagaatcaagaggaactgacacgtctagcaagacaacaagaagagata 244  Q
    |||||||||||| ||| |||| ||| || |||  || |||||||||  ||||||| ||||| ||||||| |  ||| | ||||||||||||||||||||     
T  9816386 aagaaaagaaagtgatcatgatgttctggtttggttaaaagagcaacacttgaaggatcaaaaggaacttaggcgtttggcaagacaacaagaagagatg 9816485  T
Q  245 ttacgattaatggatttgagggagaaaagagatgaagagttgaggcaacttctcactagtgttctaaggaatcaacaaccacca---tcatcttaaaact 341  Q
    || |  ||||| ||||||| |||||| || ||||||||||||||||| |||||||||||| |||| | ||||||||||||||||   || ||||||| ||    
T  9816486 tttcagttaatagatttgaaggagaagagggatgaagagttgaggcatcttctcactagttttctcaagaatcaacaaccaccatcgtcttcttaaacct 9816585  T
Q  342 ttatatttgtttttgaattctcttcatgaaactcatg 378  Q
    |||| |||| |||| |||||||||| |||||||||||    
T  9816586 ttat-tttgctttttaattctcttcctgaaactcatg 9816621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 141 - 330
Target Start/End: Original strand, 1718478 - 1718667
Alignment:
Q  141 aagaaagaaaagaaagagatgatgaagttgtgattttattgaaagagcaaagcttgaagaatcaagaggaactgacacgtctagcaagacaacaagaaga 240  Q
    |||||||  ||| |||||||||||||||| || |||| || |||||| || || |||||||||||||||| ||  ||||||| ||||||||||| |||||    
T  1718478 aagaaagggaagcaagagatgatgaagttatggttttgttaaaagaggaatgcatgaagaatcaagaggagctcgcacgtctggcaagacaacaggaaga 1718577  T
Q  241 gatattacgattaatggatttgagggagaaaagagatgaagagttgaggcaacttctcactagtgttctaaggaatcaacaaccaccatc 330  Q
    ||| ||||| ||||||| |||| ||||||| |  |||||||||||||||||||| |||||||||||| | ||||||||||| ||| ||||    
T  1718578 gatgttacggttaatgggtttgtgggagaagaaggatgaagagttgaggcaactactcactagtgttttgaggaatcaacagccatcatc 1718667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 422
Target Start/End: Complemental strand, 13789617 - 13789574
Alignment:
Q  379 tgttaggagtcccacgtcgggtaaatgaaagtgcttgatgtggt 422  Q
    ||||||||||||||| |||||||| | |||||||||||||||||    
T  13789617 tgttaggagtcccacatcgggtaactaaaagtgcttgatgtggt 13789574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 422
Target Start/End: Complemental strand, 8356333 - 8356288
Alignment:
Q  377 tgtgttaggagtcccacgtcgggtaaatgaaagtgcttgatgtggt 422  Q
    ||||||||||||||||| ||| ||| || |||||||||||||||||    
T  8356333 tgtgttaggagtcccacatcgagtatatcaaagtgcttgatgtggt 8356288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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