View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_15 (Length: 442)
Name: NF10103_low_15
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 22622341 - 22622767
Alignment:
| Q |
1 |
atagagcaaactcagctcaacaatcatccaacttagactgcttcataaatatctctcacaaatatttaacctagttcctccaatgtactcctcagcaact |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22622341 |
atagagcaaactcagctcaacaatcatctaacttagactgcttcataaatatctctcacaaatatttaacctagttcctccaatgtactcctcagcaact |
22622440 |
T |
|
| Q |
101 |
tcactgtccaaatgcattcagtcatgatgcaagacccaagcaagctaatggatttaacatccgctgtgacaatggatacttaaatcctagagcttttgaa |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22622441 |
tcactgtccaaatgcattcggtcatgatgcaagacccaagcaagctaatggatttaacatccgctgtgacaatggatacttaaatcctagagcttttgaa |
22622540 |
T |
|
| Q |
201 |
ttcagtcaattgcatgtcaatacctttggaaattatgaattgttaaaaattgaaccacaccgtatgccgtgcacttttgaaccacactgtatgccgtact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22622541 |
ttcagtcaattgcatgtcaatacctttggaaattatgaatagttaacaattgaaccacaccgtatgccgtgcacttttgaaccacactgtatgccgtact |
22622640 |
T |
|
| Q |
301 |
taggttcccaggtaatatacacgaactgcattgtctatatttttgacttaaaaactttgcctcccggaactatacctgag--aaaagtgtgaatgacctc |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
22622641 |
taggttcccaggtaatatacacgaactgcattgtctatatttttgacttaaaaactttgcctcccggaactatagctgagaaaaaagtgtgaatgacctc |
22622740 |
T |
|
| Q |
399 |
ctccctctttgcaaaacgaactgtctg |
425 |
Q |
| |
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| T |
22622741 |
ctccctctttgcaaaacgaactgtctg |
22622767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 165 - 425
Target Start/End: Complemental strand, 15146968 - 15146708
Alignment:
| Q |
165 |
tgtgacaatggatacttaaatcctagagcttttgaattcagtcaattgcatgtcaatacctttggaaattatgaattgttaaaaattgaaccacaccgta |
264 |
Q |
| |
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||||||||||||||||| ||| || || |||| ||||||||||||| |||| |||||||||||||||||| ||||||||| || |||| |||| |||| |
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| T |
15146968 |
tgtgacaatggatacttgaattgtacagttttttaattcagtcaattccatgccaatacctttggaaattacgaattgttagcaactgaagcacagcgta |
15146869 |
T |
|
| Q |
265 |
tgccgtgcacttttgaaccacactgtatgccgtac--ttaggttcccaggtaatatacacgaactgcattgtctatatttttgacttaaaaactttgcct |
362 |
Q |
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|||| |||||| ||| | |||| | ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
15146868 |
tgccatgcact----aactgtcgattttgccaaagatttaggttcccaggtaatatacacgaaccacactgtctatatttttgacttaaaaactttgcct |
15146773 |
T |
|
| Q |
363 |
cccggaactatacctgag--aaaagtgtgaatgacctcctccctctttgcaaaacgaactgtctg |
425 |
Q |
| |
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|||||||| || |||||| ||||||||| |||||||||||| |||||||||||||||| ||||| |
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|
| T |
15146772 |
cccggaaccattcctgagataaaagtgtggatgacctcctccgtctttgcaaaacgaacagtctg |
15146708 |
T |
|
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