View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_16 (Length: 433)
Name: NF10103_low_16
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 43323282 - 43322856
Alignment:
| Q |
1 |
aaaaataataagatcaatatattattttaacggttgattaaggctaatccataaaatccaacatattactcatgaaatgtatccatcaaatgatcaagct |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43323282 |
aaaaataataagattaatatattattttaacggttgattaaggctaatccataaaatccaacatattactcatgaaatgtatccatcaaatgatcaaggt |
43323183 |
T |
|
| Q |
101 |
ataaaagaaataaaaggatggggtgttggatatgggaggcgctcacacttgagaaaattattggattcaagaatgagttgttatgttccacatcgactat |
200 |
Q |
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| T |
43323182 |
ataaaagaaataaaaggatggggtgttggatatgggaggcgctcacacttgagaagattattggattcaagaatgagtcgttatattccacatcgactat |
43323083 |
T |
|
| Q |
201 |
aaacaagttcgatgttagataggtcagnnnnnnna-ggggcaatcggtcaagagttataaagtcaaaagaaaaataaagttaaaaccatatcttattgaa |
299 |
Q |
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| T |
43323082 |
aaacaagttcgatgttagataggtcagtttttttagggggcaataggttaagagttatagagtcaaaagaaaaagaaagttaaaaccatatcttattgaa |
43322983 |
T |
|
| Q |
300 |
gaatcgaatcagagagttctttataagagaagtgacacatattcacaaatcacaatgtcttaagattttggatatagctagttataatttgtggtcgttg |
399 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| |
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| T |
43322982 |
gaatcgaatcagagagctctttataagagaagtgacacatattcataaatcacaatgtcttaagattttggatatatctaattataatttgtggtcattg |
43322883 |
T |
|
| Q |
400 |
gtgaaccctgatcatcattaacccttt |
426 |
Q |
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| T |
43322882 |
gtgagccccgatcatcattaacccttt |
43322856 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 29676367 - 29676417
Alignment:
| Q |
16 |
aatatattattttaacggttgattaaggctaatccataaaatccaacatat |
66 |
Q |
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| T |
29676367 |
aatatattattttaattattgattaaggttaatccataaaatccaacatat |
29676417 |
T |
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