View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_17 (Length: 423)
Name: NF10103_low_17
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_17 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 22 - 423
Target Start/End: Complemental strand, 30403611 - 30403210
Alignment:
| Q |
22 |
cacgagcaattcagtacatatctcccagataactcttgtatgttatctaacagaagaaaaaatacatgcaaaaacataatcttaacaaaggtagaaatca |
121 |
Q |
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| T |
30403611 |
cacgaacaattcagtacatatctcccagataactcttgtatgttatctaacagaagaaaaaatacatgcaaaaacataatcttaacaaaggtagaaatca |
30403512 |
T |
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| Q |
122 |
ttatctcttatttgatcgaaaaacagtgaatattaataagagcaaatttcagttttttctaaattttcagattgtattttccgaattgtatatggaacta |
221 |
Q |
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| T |
30403511 |
ttatctcttatttgatcgaaaaatagtgaatattaataagagcaaatttcagttttttctaaattttcggattgtattttccgaattgtatatggaacta |
30403412 |
T |
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| Q |
222 |
ggtgaggcctagaaatgtctaattgttctcacagaccttatgctcctaatggggtgaaccatgattaatttttctaccggtgcaatccaccttgtgcaca |
321 |
Q |
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| T |
30403411 |
ggtgaggcctagaaatgttcaattgttctcacagaccttatgctcctaatggggtgaaccatgattaatttttctaccggtgcaaaccaccttgtgcaca |
30403312 |
T |
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| Q |
322 |
ttttgttactaaggactatggtcacatggatatggtagattatgagacacatgacatgattttagacgtagtctattggaagtgcatgtgtaagaatgtg |
421 |
Q |
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| T |
30403311 |
ttttgttactaaggactatggtcacatggatatggtagattatgagacacatgacatgattttagacgtagtatatttgaagtgcatgtgtaagaatgtg |
30403212 |
T |
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| Q |
422 |
ac |
423 |
Q |
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| T |
30403211 |
ac |
30403210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 375
Target Start/End: Original strand, 30842027 - 30842146
Alignment:
| Q |
256 |
accttatgctcctaatggggtgaaccatgattaatttttctaccggtgcaatccaccttgtgcacattttgttactaaggactatggtcacatggatatg |
355 |
Q |
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| T |
30842027 |
accttgtgctcctgatggggtgaaccatgaggaatttttctatgaatgtaaaccaccttgtgcacattttgttgttaaggattatggtcacatggatatg |
30842126 |
T |
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| Q |
356 |
gtagattatgagacacatga |
375 |
Q |
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| T |
30842127 |
ttagatgatgagacacatga |
30842146 |
T |
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