View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_2 (Length: 623)
Name: NF10103_low_2
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Original strand, 22552949 - 22553556
Alignment:
| Q |
1 |
aaatcaggatagattcttggtgtcaaatcactcaccaattcacttggtggacaaaccaccttatcaccttttggacacaaaaagaaagctagagattttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22552949 |
aaatcaggatagattcttggtgtcaaatcactcaccaattcacttggtggacaaaccaccttatcaccttttggacacaaaaagaaagctagagattttc |
22553048 |
T |
|
| Q |
101 |
ttgttgtcttgttgttcaccactgccctatgtaaacaactcttgtatctcccatttgaaagagcctaaacaaaaagagagtgnnnnnnngttcaataaca |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22553049 |
ttgttgtcttgttgttcaccactgccctatgtaaacaactcttgtatctcccatttgaaagagcctaaacaaaaagagagtgaaaaaaagttcaataaca |
22553148 |
T |
|
| Q |
201 |
ccatcatacataaaatatgtggccaaaattcatgacccttttgctaaatatttattnnnnnnnnnntttagttacaaaaataattttttaaaaatagttt |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||| ||||| || || ||||||||||||||||||||||||||||||| |
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| T |
22553149 |
ccatcatacataaaatatgtggccaaaattcatgacccttttgttaagtatttctttaaaaaaaaattgagttacaaaaataattttttaaaaatagttt |
22553248 |
T |
|
| Q |
301 |
acttctagatannnnnnnnn---gtttaagaatctaaaacaaaacaatgaaaactttcaaaagtgttgaaaagaaagagaacataacataccatgaaagt |
397 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22553249 |
acttctagattttttttttgtttgtttaagaatctaaaacaaaacaatgaaaactttcaaaagtgttgaaaagaaagagaacataacataccatgaaagt |
22553348 |
T |
|
| Q |
398 |
gtcaccaatattgacaacaaaagcattgaaatttggcctaatggaatgccattcattgtcaacaaaaacttgcaagccaccaacttggtcttggtgtaga |
497 |
Q |
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|
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| T |
22553349 |
gtcaccaatattgacaacaaaagcattgaaatttggcctaatggaatgccactcattgtcaacaaaaacttgcaagccaccaacttggtcttggtgtaga |
22553448 |
T |
|
| Q |
498 |
atggttaaagatgttggatcacaatgaggtccagttcctaaagtgagatcaggtttttgacatggtggataataattaagcctcattattgatttattct |
597 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
22553449 |
atggttaaagatgttggatcacaatgaggtccagttcctaaagtgagatcaggtttttgacatggtgggtaataattaagtctcattattgatttattct |
22553548 |
T |
|
| Q |
598 |
cttcaaaa |
605 |
Q |
| |
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|||||||| |
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| T |
22553549 |
cttcaaaa |
22553556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 382 - 605
Target Start/End: Complemental strand, 46103549 - 46103326
Alignment:
| Q |
382 |
aacataccatgaaagtgtcaccaatattgacaacaaaagcattgaaatttggcctaatggaatgccattcattgtcaacaaaaacttgcaagccaccaac |
481 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||||||| |||||||||||||||| || |
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| T |
46103549 |
aacataccatgaaagtatcaccaatattgacaacaaaagcattgaaatgtgggctaatggaatgccattgatcgtcaacataaacttgcaagccacctac |
46103450 |
T |
|
| Q |
482 |
ttggtcttggtgtagaatggttaaagatgttggatcacaatgaggtccagttcctaaagtgagatcaggtttttgacatggtggataataattaagcctc |
581 |
Q |
| |
|
||| || ||||| |||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||| | ||||| ||||| |||||| |
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| T |
46103449 |
ttgatcctggtgaagaatggttaaagatgttggatcacaatgaggtccagtgcctagagtgagctcaggtttttgacaagtaggatagtaattgagcctc |
46103350 |
T |
|
| Q |
582 |
attattgatttattctcttcaaaa |
605 |
Q |
| |
|
|||||||| |||||||||||||| |
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| T |
46103349 |
attattgaactattctcttcaaaa |
46103326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 46104234 - 46104099
Alignment:
| Q |
33 |
caccaattcacttggtggacaaaccaccttatcaccttttggacacaaaaagaaagctagagattttcttgttgtcttgttgttcaccactgccctatgt |
132 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||||| | |||||||||||||||||| |||||||| ||||| | | | |||| |||||||||||||| |
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| T |
46104234 |
caccaattcacatggtggagttaccactttatcacttaatggacacaaaaagaaagcaagagatttccttgtcttttcgctgtttaccactgccctatgc |
46104135 |
T |
|
| Q |
133 |
aaacaactcttgtatctcccatttgaaagagcctaa |
168 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| |
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| T |
46104134 |
aaacagctcttgtatctcccatttgaaagtgcctaa |
46104099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 36445615 - 36445575
Alignment:
| Q |
118 |
accactgccctatgtaaacaactcttgtatctcccatttga |
158 |
Q |
| |
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|||||||||||||| || |||||||||||||| |||||||| |
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| T |
36445615 |
accactgccctatgcaagcaactcttgtatctaccatttga |
36445575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 478 - 568
Target Start/End: Original strand, 12872603 - 12872693
Alignment:
| Q |
478 |
caacttggtcttggtgtagaatggttaaagatgttggatcacaatgaggtccagttcctaaagtgagatcaggtttttgacatggtggata |
568 |
Q |
| |
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||||||| |||||||| ||||||||||| || || || |||||||| |||||||||||||||| | |||||| |||| ||||||||||| |
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| T |
12872603 |
caacttgatcttggtggagaatggttaaggaagtagggtcacaatggggtccagttcctaaagctaaatcaggatttttgcatggtggata |
12872693 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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