View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_20 (Length: 404)
Name: NF10103_low_20
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 47002754 - 47003127
Alignment:
| Q |
18 |
aaaaccaggtctaaaacaactcgatctgttatgcatataacatgaactattaatttaattatcaactgacctgcctgttttctatgtatcacaggtttct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47002754 |
aaaaccaggtctaaaacaactcgatctgttatgcatataacatgaactattaatttaattatcaactgacctgcctgttttctatgtatcacaggtttct |
47002853 |
T |
|
| Q |
118 |
ccaacctacaaagaattgccattggacttttgttgtcgacaatcggaatggcagctgcttctctgattgaagtgaaacggttgtcagtggcaaaaggtgt |
217 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47002854 |
ccaacctacaaaggattgccattggacttttgttgtcgacaatcggaatggcagctgcttctctgattgaagtgaaacggttgtcagtggcaaaaggtgt |
47002953 |
T |
|
| Q |
218 |
aaaaggcaaccaaacaacactaccaattagtgttttccttctagtcccacaattcttcttggttggttctggtgaagcattcatatacacaggacaactt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47002954 |
aaaaggcaaccaaacaacactaccaattagtgttttccttctagtcccgcaattcttcttggttggttctggtgaagcattcatatacacaggacaactt |
47003053 |
T |
|
| Q |
318 |
gatttcttcataacacaatcaccaaaaggaatgaaaacaatgagcactggtctcttcctaacaactttatccct |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47003054 |
gatttcttcataacacaatcaccaaaaggaatgaaaacaatgagcactggtctcttcctaacaactttatccct |
47003127 |
T |
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