View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_23 (Length: 394)
Name: NF10103_low_23
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 95 - 376
Target Start/End: Complemental strand, 33046137 - 33045856
Alignment:
| Q |
95 |
atggttgattgatcaatacttgaaagagattaatagaagggttgaaatgttgaccaagaaatctcaaggtcaaattcaaatggtgactaatattggagta |
194 |
Q |
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| T |
33046137 |
atggttgattgatcaatacttgaaagagattaatagaagggttgaaatgttgaccaagaaatctcaaggtcaaattcaaatggtgactaatattggagta |
33046038 |
T |
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| Q |
195 |
gctaagattgaagaaaatgctcaagggagtcatgtcatacaaaaacaacattggtttatgaatttgatgggtggtggtggttggaatgacaaacctcctt |
294 |
Q |
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| T |
33046037 |
gctaagattgaagaaaatgctcaagggagtcatgtcatacaaaagcaacattggtttatgaatttgatgggtggtggcggttggaatgacaaacctcctt |
33045938 |
T |
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| Q |
295 |
tgggagatgtttgtcaacaaaatggattttagccaaaaccattttcccattgagaagtgttgtgcttgtttttgttgtcgtt |
376 |
Q |
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| T |
33045937 |
tgggagatgtttgtcaacaaaatggattttagccaaacccattttcccattgagaagtgttgtgcttgtttttgttgtcgtt |
33045856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 33046208 - 33046128
Alignment:
| Q |
1 |
atagagaaaaggaaatgactcatctcatgtttcaatatattagtgcaggtaaacttatggacaacataagtatggttgatt |
81 |
Q |
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| T |
33046208 |
atagagaaaaggaaatgactcatctcatgtttcaatatattagtgcaggtaaacttatggacaacataagtatggttgatt |
33046128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 29358056 - 29357910
Alignment:
| Q |
1 |
atagagaaaaggaaatgactcatctcatgtttcaatatattagtgcaggtaaacttatggacaacataagtatggttgatttaaatgatatggcatggtt |
100 |
Q |
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| T |
29358056 |
atagagaaaaagaaatgactcagttaatgtttcagtaccttagtgctgatcaagttatgcacaatataagcatggttgatttgaatgatatggcatggtt |
29357957 |
T |
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| Q |
101 |
gattgatcaatacttgaaagagattaatagaagggttgaaatgttga |
147 |
Q |
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| T |
29357956 |
gattgatcagtatttgaaagatatcaataggagggttgaaatgttga |
29357910 |
T |
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