View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10103_low_24 (Length: 365)
Name: NF10103_low_24
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 358
Target Start/End: Original strand, 44088498 - 44088841
Alignment:
| Q |
19 |
aaagtgcttgttttcttattgatatggtttacgacatactttattatattgtttctcttaatttaactatgcatagtttatactttatttctgtttaaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44088498 |
aaagtgcttgttttcttattgatatggtttacgacatactttattatattgtttctcttaatttaactatgcatagtttatactttatttctgtttaaat |
44088597 |
T |
|
| Q |
119 |
gaaaattttcagtgtagataaatggcattgatattgcaaaagaatctcacaattatgtgattgcatgcaattctcgctaacaaaccaaggcatgccgcta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44088598 |
gaaaattttcagtgtagataaatggcattgatattgcaaaagaatctcacaattatgtgattgcatgcaattctcgctaacaaaccaaggcatgccgcta |
44088697 |
T |
|
| Q |
219 |
tgcctgatataaacaaggtgttagaaaaatacatttcctttcggaagttgtttgttagaaaccagcaattcttcatgttggaacttggttg----ttact |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44088698 |
tgcctgatataaacaaggtgttagaaaaatacatttccttccggaagttgtttgttagaaaccagcaattcttcatgttggaacttggttgttacttact |
44088797 |
T |
|
| Q |
315 |
attattactattgttctcagcaaaactctgtttactctctgctt |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44088798 |
attattactattgttctcagcaaaactctgtttcctctctgctt |
44088841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 152 - 343
Target Start/End: Original strand, 44080386 - 44080574
Alignment:
| Q |
152 |
ttgcaaaagaatctcacaattatgtgattgcatgcaattctcgctaacaaaccaaggcatgccgctatgcctgatataaacaaggtgttagaaaaataca |
251 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| | |
|
|
| T |
44080386 |
ttgcaaatgaatctcgca-ttatgtgattgcatgcaattttcgctaacaaaccaaggcatgccactatgcctgatataaacaaggtattagaaaaataaa |
44080484 |
T |
|
| Q |
252 |
tttcctttcggaagttgtttgttagaaaccagcaattcttcatgttggaacttggttgttac---tattattactattgttctcagcaaaactct |
343 |
Q |
| |
|
| ||| | | |||| ||||||| ||| | ||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
44080485 |
tatcc-tgcagaag----ttgttaggaactaacaattcttcatgttggaacttagttgttaccgttattattactcttgttctcagcaaaactct |
44080574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 160 - 314
Target Start/End: Original strand, 44068374 - 44068522
Alignment:
| Q |
160 |
gaatctcacaattatgtgattgcatgcaattctcgctaacaaaccaaggcatgccgctatgcctgatataaacaaggtgttagaaaaatacatttccttt |
259 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || ||| | |
|
|
| T |
44068374 |
gaatctcaca-ttatgtgattgcatgcaattttcgctaacaaaccaaggcatgccactatgcctgatataaacaaggtattagaaaaataaatatcc-tg |
44068471 |
T |
|
| Q |
260 |
cggaagttgtttgttagaaaccagcaattcttcatgttggaacttggttgttact |
314 |
Q |
| |
|
| |||| ||||||| ||| | ||||||||||||||||||||| ||||||||| |
|
|
| T |
44068472 |
cagaag----ttgttaggaactaacaattcttcatgttggaacttagttgttact |
44068522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 44068279 - 44068366
Alignment:
| Q |
24 |
gcttgttttcttattgatatggtttacgacatactttattatattgtttctcttaatttaactatgcatagtttatactttatttctgttt |
114 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
44068279 |
gcttgttttcttattgatattgtttacgacatactttat---attgtttctctttatttaactgtgcatagtttatacttactttctgttt |
44068366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 44080299 - 44080386
Alignment:
| Q |
24 |
gcttgttttcttattgatatggtttacgacatactttattatattgtttctcttaatttaactatgcatagtttatactttatttctgttt |
114 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44080299 |
gcttgttttcttattgatattgtttagaacatactttat---attgtttctctttatttaactatgcatagttaatactttatttctgttt |
44080386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 44088275 - 44088370
Alignment:
| Q |
26 |
ttgttttcttattgatatggtttacgacatactttattatattgtttctcttaatttaactatgcatagtttatactttatttctgtttaaatgaaaatt |
125 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||| ||||||||| |||||||| |||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
44088275 |
ttgttttcttattgatattgcttactacatactttat------gtttctcttgatttaactgtgcatagtttatacttta-ttctgcttaaatgaaaatt |
44088367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 43033400 - 43033479
Alignment:
| Q |
178 |
attgcatgcaattctcgctaacaaaccaaggcatgccgctatgcctgatataaacaaggtgttagaaaaatacatttcctt |
258 |
Q |
| |
|
||||||||||| | || ||||||||||||| |||||| ||| || |||||||||||||| ||||||| || ||||||||| |
|
|
| T |
43033400 |
attgcatgcaagt-tccctaacaaaccaagacatgccactagtccagatataaacaaggtattagaaagatgcatttcctt |
43033479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 26978538 - 26978580
Alignment:
| Q |
314 |
tattattactattgttctcagcaaaactctgtttactctctgc |
356 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
26978538 |
tattattactcttgttctcagccaaactctgtttcctctctgc |
26978580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 44053449 - 44053495
Alignment:
| Q |
62 |
ttatattgtttctcttaatttaactatgcatagtttatactttattt |
108 |
Q |
| |
|
||||||| |||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
44053449 |
ttatattagttctcttaatttaactgtccatagtttatactttattt |
44053495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 4616753 - 4616810
Alignment:
| Q |
131 |
tgtagataaatggcattgatattgcaaaagaatctcacaattatgtgattgcatgcaa |
188 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||||||||| |||| | ||||||||||| |
|
|
| T |
4616753 |
tgtagaaaaatggcattaatattgcagaagaatctcacagttatctaattgcatgcaa |
4616810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University