View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_25 (Length: 358)
Name: NF10103_low_25
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 61 - 351
Target Start/End: Complemental strand, 38791376 - 38791086
Alignment:
| Q |
61 |
tcaaggtcttttggtcatctctaccagacgatcattataagtttaatattggtgaatatcataaaaagtcaacatgaatatctagtcgtggaggtttgat |
160 |
Q |
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| T |
38791376 |
tcaaggtcttttggtcatctctaccagacgatcattataagtttaatattggtgaatatcataaaaagtcaacatgaatatctagtcgtggaggtttgat |
38791277 |
T |
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| Q |
161 |
tagatattgacatggtaggaatatatgtggtttctacaacataattgtcactttatctccctcgtgggcataacttttggggcctttaaatacactggaa |
260 |
Q |
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| T |
38791276 |
tagatattgacatggtaggaatatacgtggtttcgacaacataattgtcactttatctgcctcgtgggcataacttttggggcctttaaatacactggaa |
38791177 |
T |
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| Q |
261 |
tagatatgacgagtcaattgaatattagaaacaccatttttgaaatggattctatgatcatggttaatacggttacttcaagttcttctca |
351 |
Q |
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| T |
38791176 |
tagatatgacgagtcaattgaatattagaaacaccatttttgaaatggattctatgatcatggttaatatggttacttcaggttcatctca |
38791086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 38791786 - 38791722
Alignment:
| Q |
1 |
tgatgaaaggtatcatataagtatgactagagacaatctttgtattatatatggcgactatcaag |
65 |
Q |
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| T |
38791786 |
tgatgaaaggtatcatataagtatgactagagacaatctttgtattatatatggtgactatcaag |
38791722 |
T |
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