View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Alignment Overview
Query: NF10103_low_28 (Length: 345)
Name: NF10103_low_28
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 169 - 322
Target Start/End: Original strand, 45399363 - 45399516
Alignment:
| Q | 169 | aaatgttgcgaccttatgggtcagtttaggcagtgttgtaatacgacgacccaatttcgaacatagagcgaagaccgataattattccatacggccgtgt | 268 | Q |
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| T | 45399363 | aaatgttgtgaccttatgggtcagtttaggcagtgatgtaatacgacgacccaatttcgaacatagagcgaaggccgataattattccatacggccgtgt | 45399462 | T |
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| Q | 269 | taatgctcatgcatactactcactgccataaatgtaaccattgaaaaaatatga | 322 | Q |
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| T | 45399463 | taatgctcatgcatactactcaccgccataaatgtaaccattgaaaaaatatga | 45399516 | T |
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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 45399294 - 45399367
Alignment:
| Q | 7 | agatgttagatctcaaaccatgagagtaggaggcatgggcgtgcctaaacccatattagtagtgttcacaaatg | 80 | Q |
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| T | 45399294 | agatgttagatctcaaaccatgagagtaggaggcatgggcgtgcctaaacgcatattagtagtgttcacaaatg | 45399367 | T |
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