View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_3 (Length: 602)
Name: NF10103_low_3
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 18 - 578
Target Start/End: Original strand, 2468657 - 2469217
Alignment:
| Q |
18 |
tcttattgttttatgctctatcacaggcatttttgctgatatttttctctgaactgggagacaagacttttttcattgcagtgagtgcacataaatcact |
117 |
Q |
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| T |
2468657 |
tcttattgttttatgctctatcacaggcatttttgctgatatttttctctgaactgggagacaagacttttttcattgcagtgagtgcacataaatcact |
2468756 |
T |
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| Q |
118 |
tgttattgtgatatttttctcattttcattcttttcaaaccaaatacaaaacaatgaagaaatgaaactgtgatattaaaaaacaataacctcctttctg |
217 |
Q |
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| T |
2468757 |
tgttattgtgatatttttctcattttcattcttttcaaaccaaatacaaaacaatgaagaaatcaaactgtgatattaaaaaacaataacctcctttctg |
2468856 |
T |
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| Q |
218 |
ttaagatttatttgaagaatttggttattgatgagataaaaatgaaaggggaagctctggaaataagtttgatttgagtgtttgatgtttatgcaggcat |
317 |
Q |
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| T |
2468857 |
ttaagatttatttgaagaatttggttattgatgagataaaaatgaagggggaagctgttgaaataagtttgatttgagtgtttgatgtttatgcaggcat |
2468956 |
T |
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| Q |
318 |
tgttagcagctagaaattcagccggtgttgttttcgttgggacatttggcgcacttgcgtatgttttaatgtttcctgtgatttagattcccttgtgtta |
417 |
Q |
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| T |
2468957 |
tgttagcagctagaaattcagccagtgttgttttcgttgggacatttggcgcacttgcgtatgttttaatgtttcctgtgatttagattcccttgtgtta |
2469056 |
T |
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| Q |
418 |
tgttctttgttttgaaggtgtttttcatgattaatcaccacggttgataagttgatgcaatacaagcaattgtggttgaaatattttcacaacttagaat |
517 |
Q |
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| T |
2469057 |
tgttctttgttttgaagatgtttttcatgattaatcaccacggttgataagttgatgcaatacaagcaattgtggttgaaatattttcacaacttagaat |
2469156 |
T |
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| Q |
518 |
aatgaaattggataattaaaagtcttcacagagcaagctagccaacaatatcactagactt |
578 |
Q |
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| T |
2469157 |
aatgaaattggataattaaaagtcttcacagagcaagctagccaacaatatcactagactt |
2469217 |
T |
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