View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_30 (Length: 344)
Name: NF10103_low_30
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 25910784 - 25910491
Alignment:
| Q |
1 |
acagatgagaggtaggtagtggcaagggagtagagccctgtagcttaaaaagaaaagaagcaggtagatatcatcacaaaacaatctaaatattcatcat |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25910784 |
acagatgagaggtaggtagtggcaagggagcagagcactgtagcttaaaaagaaaagaagcaggtagatatcatcacaaaacaatctaaatattcatcat |
25910685 |
T |
|
| Q |
101 |
ttcacattaaaccatattgtttcaaatggatgaggattgtgcattacgagcaaaataaaaatggagaaggggatgtgaagatgaaaacacagcataaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25910684 |
ttcacattaaaccatattgtttcaaatggacgaggattgtgcattacgagcaaaataaaaatggagaaggggatgtgaagatgaaaacacagcataaaaa |
25910585 |
T |
|
| Q |
201 |
tggagagcaacgtgtttgataaggtcaactaagcataagaaaaagcattggtgtgattagcacgaaaaagttatcgtgctatttagcatttttc |
294 |
Q |
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| T |
25910584 |
tggagagaaacgtgtttgataaggtcaactaagcataagaaatagcattcgcgtgattagcacgaaaatgttatcctgctatttagcatttttc |
25910491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 3 - 295
Target Start/End: Original strand, 38879394 - 38879691
Alignment:
| Q |
3 |
agatgagaggtaggtagtggcaagggagtagagccctgtagcttaaaaagaaaagaagcaggtagatatcatcacaaaacaatctaaatattcatcattt |
102 |
Q |
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|||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
38879394 |
agatgagaggtaggtagtggtaagggagcagagcactgtagcttaaaaagaaaagaagtagatagatatcatcacaaaacaatctaaatattcatcattt |
38879493 |
T |
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| Q |
103 |
cacattaaaccatattgtttcaaatggatgaggattgtgc-----attacgagcaaaataaaaatggagaaggggatgtgaagatgaaaacacagcataa |
197 |
Q |
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| T |
38879494 |
cacattaaaccatattgtttcaaatggacgaggattgtgcagtgcattacgagcaaaataaaaatggagaaggggatatgaagatgaaaacacagcataa |
38879593 |
T |
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| Q |
198 |
aaatggagagcaacgtgtttgataaggtcaactaagcataagaaaaagcattggtgtgattagcacgaaaaagttatcgtgctatttagcatttttct |
295 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38879594 |
aaatggagagaaatatgtttgataaggtcaactaagcataagaaatagcattcgtgtgattagcacgaaaaagttatcgtgctatttagcatttttct |
38879691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 26864164 - 26864100
Alignment:
| Q |
1 |
acagatgagaggtaggtagtggcaaggg-agtagagccctgtagcttaaaaagaaaagaagcagg |
64 |
Q |
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||||||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||| |
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| T |
26864164 |
acagatgagaggtaggtcgtggcaaggggagcagagcactgtagcttaaaaagaaaagaagcagg |
26864100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 329
Target Start/End: Complemental strand, 44634183 - 44634149
Alignment:
| Q |
295 |
taaaattaaatatggattcgaagtacatggaaaat |
329 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
44634183 |
taaaattaaatatggattcgaagtacatggaaaat |
44634149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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