View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10103_low_32 (Length: 336)
Name: NF10103_low_32
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 6 - 314
Target Start/End: Complemental strand, 35821363 - 35821054
Alignment:
| Q |
6 |
aggtgtggtaaaacacgtttacgataatagttgttttaaggatattgtttaagaaatattaaa-taaaagtttggttgaaaaaataagtcaaataaatta |
104 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35821363 |
aggtgtggtaaaacacttttacgataacagttgttttaaggatattgtttaagaaatattaaaataaaagtttggttgaaaaaataagtcaaataaatta |
35821264 |
T |
|
| Q |
105 |
acaaacacattgtaattgtttaatcaataccctaaaaacattaatttttggttggattttgtttatcttcctgcctaattttggattattagacatgttt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35821263 |
acaaacacattgtaattgtttaatcaataccctaaaaacattaatttttagttggattttgtttatcttcctgcctaattttggattattagacctgttt |
35821164 |
T |
|
| Q |
205 |
cccttaaaaatcaaatgattaacgcaaagaataccctaatatacatttttcttagtaagaaaattgtcttctgccgtgcaccacaccataaatatgctct |
304 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35821163 |
cccttaaaaactgaatgattaacgcaaagaataccctaatatatatttttcttagtaagaaaattgtcttctgccgtgcaccacaccataaatatgctct |
35821064 |
T |
|
| Q |
305 |
ccttccacca |
314 |
Q |
| |
|
|||||||||| |
|
|
| T |
35821063 |
ccttccacca |
35821054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University