View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_33 (Length: 335)
Name: NF10103_low_33
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 31894622 - 31894929
Alignment:
| Q |
14 |
aggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgctggttctgccaattcagaccaaaaggnnnnnnnnn-atctttc |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31894622 |
aggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgctggttctgccaattcagaccaaaaggttttttttttatctttc |
31894721 |
T |
|
| Q |
113 |
tttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactcattaccttttttctagttaactttgaccttgtaatattgtgat |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31894722 |
tttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactcattaccttttttctagttaactttgaccttgtaatattgtgat |
31894821 |
T |
|
| Q |
213 |
tagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacacgaaacagtttacctcaagattttgatgatcaagagatattgt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31894822 |
tagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacacgaaacagtttacctcaagattttgatgatcaagagatattgt |
31894921 |
T |
|
| Q |
313 |
atgaaact |
320 |
Q |
| |
|
|||||||| |
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|
| T |
31894922 |
atgaaact |
31894929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 31899206 - 31899513
Alignment:
| Q |
14 |
aggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgctggttctgccaattcagaccaaaaggnnnnnnnnn-atctttc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
31899206 |
aggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgctggttctgccaattcagaccaaaaggttttttttttatctttc |
31899305 |
T |
|
| Q |
113 |
tttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactcattaccttttttctagttaactttgaccttgtaatattgtgat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31899306 |
tttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactcattaccttttttctagttaactttgaccttgtaatattgtgat |
31899405 |
T |
|
| Q |
213 |
tagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacacgaaacagtttacctcaagattttgatgatcaagagatattgt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31899406 |
tagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacacgaaacagtttacctcaagattttgatgatcaagagatattgt |
31899505 |
T |
|
| Q |
313 |
atgaaact |
320 |
Q |
| |
|
|||||||| |
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|
| T |
31899506 |
atgaaact |
31899513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 31914915 - 31915222
Alignment:
| Q |
14 |
aggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgctggttctgccaattcagaccaaaaggnnnnnnnnn-atctttc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
31914915 |
aggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgctggttctgccaattcagaccaaaaggttttttttttatctttc |
31915014 |
T |
|
| Q |
113 |
tttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactcattaccttttttctagttaactttgaccttgtaatattgtgat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31915015 |
tttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactcattaccttttttctagttaactttgaccttgtaatattgtgat |
31915114 |
T |
|
| Q |
213 |
tagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacacgaaacagtttacctcaagattttgatgatcaagagatattgt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31915115 |
tagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacacgaaacagtttacctcaagattttgatgatcaagagatattgt |
31915214 |
T |
|
| Q |
313 |
atgaaact |
320 |
Q |
| |
|
|||||||| |
|
|
| T |
31915215 |
atgaaact |
31915222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 31948563 - 31948870
Alignment:
| Q |
14 |
aggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgctggttctgccaattcagaccaaaaggnnnnnnnnn-atctttc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
31948563 |
aggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgctggttctgccaattcagaccaaaaggttttttttttatctttc |
31948662 |
T |
|
| Q |
113 |
tttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactcattaccttttttctagttaactttgaccttgtaatattgtgat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31948663 |
tttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactcattaccttttttctagttaactttgaccttgtaatattgtgat |
31948762 |
T |
|
| Q |
213 |
tagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacacgaaacagtttacctcaagattttgatgatcaagagatattgt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31948763 |
tagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacacgaaacagtttacctcaagattttgatgatcaagagatattgt |
31948862 |
T |
|
| Q |
313 |
atgaaact |
320 |
Q |
| |
|
|||||||| |
|
|
| T |
31948863 |
atgaaact |
31948870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 31683810 - 31683503
Alignment:
| Q |
14 |
aggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgctggttctgccaattcagaccaaaaggnnnnnnnnn-atctttc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31683810 |
aggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgctggttctgccaattcagaccaaaaggttttttttttatctttc |
31683711 |
T |
|
| Q |
113 |
tttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactcattaccttttttctagttaactttgaccttgtaatattgtgat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31683710 |
cttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactcattaccttttttctagttaactttgaccttgtaatattgtgat |
31683611 |
T |
|
| Q |
213 |
tagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacacgaaacagtttacctcaagattttgatgatcaagagatattgt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31683610 |
tagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacacgaaacagtttacctcaagattttgatgatcaagagatattgt |
31683511 |
T |
|
| Q |
313 |
atgaaact |
320 |
Q |
| |
|
|||||||| |
|
|
| T |
31683510 |
atgaaact |
31683503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 52652785 - 52652686
Alignment:
| Q |
139 |
cttatttgattttgttctctaatgaaaactcattaccttttttc-tagttaactttgaccttgtaatattgtgattagggtgcaaataatattgcaaaac |
237 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| ||||| | | |||||||||||||||| ||| || ||||||| |||||| |||||| ||||||| |
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|
| T |
52652785 |
cttatttgattttgttctctaataaaagttcattttcttttctagttgttaactttgaccttgcaatgttttgattagtgtgcaagtaatatagcaaaac |
52652686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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