View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10103_low_34 (Length: 334)

Name: NF10103_low_34
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10103_low_34
NF10103_low_34
[»] chr7 (8 HSPs)
chr7 (19-228)||(45702601-45702810)
chr7 (226-327)||(45702846-45702946)
chr7 (65-123)||(25408400-25408458)
chr7 (54-123)||(3321914-3321983)
chr7 (54-123)||(7073037-7073106)
chr7 (65-123)||(25403643-25403701)
chr7 (39-118)||(21985971-21986050)
chr7 (39-118)||(24272856-24272935)
[»] scaffold0209 (1 HSPs)
scaffold0209 (53-123)||(268-338)
[»] chr8 (8 HSPs)
chr8 (54-123)||(21040416-21040485)
chr8 (54-123)||(4814352-4814421)
chr8 (54-123)||(28893750-28893819)
chr8 (54-123)||(16754386-16754455)
chr8 (54-123)||(28330881-28330950)
chr8 (54-123)||(25682893-25682962)
chr8 (39-118)||(26401306-26401385)
chr8 (65-111)||(40827259-40827305)
[»] chr6 (6 HSPs)
chr6 (54-123)||(22348101-22348170)
chr6 (54-123)||(13881725-13881794)
chr6 (54-123)||(17691978-17692047)
chr6 (54-123)||(25944655-25944724)
chr6 (54-123)||(35203189-35203258)
chr6 (65-118)||(24434270-24434323)
[»] chr1 (3 HSPs)
chr1 (54-176)||(2396381-2396503)
chr1 (54-123)||(9524714-9524783)
chr1 (39-118)||(47701993-47702072)
[»] chr3 (7 HSPs)
chr3 (54-123)||(10095932-10096001)
chr3 (54-123)||(10202818-10202887)
chr3 (54-123)||(10899995-10900064)
chr3 (65-123)||(10609910-10609968)
chr3 (53-123)||(47880014-47880084)
chr3 (54-123)||(16460450-16460519)
chr3 (54-123)||(54191494-54191563)
[»] chr4 (5 HSPs)
chr4 (54-176)||(15315250-15315372)
chr4 (54-123)||(4568329-4568398)
chr4 (54-123)||(16637147-16637216)
chr4 (39-118)||(3791089-3791168)
chr4 (39-123)||(5144960-5145044)
[»] chr2 (8 HSPs)
chr2 (54-176)||(2739138-2739260)
chr2 (54-123)||(17935070-17935139)
chr2 (54-123)||(20051887-20051956)
chr2 (54-123)||(22714360-22714429)
chr2 (54-123)||(39685233-39685302)
chr2 (41-118)||(31058012-31058089)
chr2 (39-118)||(39484809-39484888)
chr2 (39-118)||(39486167-39486246)
[»] chr5 (3 HSPs)
chr5 (54-123)||(25450743-25450812)
chr5 (39-228)||(24558430-24558619)
chr5 (39-228)||(24599462-24599651)
[»] scaffold0559 (1 HSPs)
scaffold0559 (65-111)||(4835-4881)


Alignment Details
Target: chr7 (Bit Score: 178; Significance: 6e-96; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 45702601 - 45702810
Alignment:
Q  19 tcacattcattaattccatttcaagattgtactgattaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgta 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||    
T  45702601 tcacattcattaattccatttcaagattgtactgatttacaatcttcataagtacccttataaaataatattttaccatcgatgcgaaaatctcattgta 45702700  T
Q  119 atcaaatctcttaacccgagaaaaacccttagccacaactcttgttttatactttggttctttaattctctaaataccttctttgttcttgaagatctac 218  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  45702701 atcaaatctcttaacccgggaaaaacccttagccacaactcttgttttatactttggttctttaattctctaaataccttccttgttcttgaagatccac 45702800  T
Q  219 ttacatccaa 228  Q
    ||||||||||    
T  45702801 ttacatccaa 45702810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 45702846 - 45702946
Alignment:
Q  226 caagtcagttcatctccaatgaatgaatttcctcgttaatggccttcaaactattttagactctcattgctctcaaatgcttttttgaaggcctttgctt 325  Q
    ||||| |||||||||||||||||||||||||||| || |||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||    
T  45702846 caagttagttcatctccaatgaatgaatttcctcattcatggcctt-aaactatttcagactctcattgctctcaaatgctttcttgaaggcctttgttt 45702944  T
Q  326 ct 327  Q
    ||    
T  45702945 ct 45702946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 25408458 - 25408400
Alignment:
Q  65 cataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||||||||| |||||||||||||||||||||| || || |||||||||||||    
T  25408458 cataagtacccttatagaacaatgttttaccaccgatgaaaagatttcattgtaatcaa 25408400  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 3321914 - 3321983
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| ||| || || |||||||||||||    
T  3321914 ttaacaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaa 3321983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 7073106 - 7073037
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| ||| || || |||||||||||||    
T  7073106 ttaacaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaa 7073037  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 25403701 - 25403643
Alignment:
Q  65 cataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||||||||| |||||||||||||||||| ||| || || |||||||||||||    
T  25403701 cataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaa 25403643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 21985971 - 21986050
Alignment:
Q  39 tcaagattgtactgattaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgta 118  Q
    ||||||||| | ||||| |||||   |||||||| ||||||  |||||||||| ||||||| |||||| |||||||||||    
T  21985971 tcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccaccggtgagaagatctcattgta 21986050  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 24272935 - 24272856
Alignment:
Q  39 tcaagattgtactgattaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgta 118  Q
    ||||||||| | ||||| |||||   |||||||| ||||||  |||||||||| ||||||| |||||| |||||||||||    
T  24272935 tcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccaccggtgagaagatctcattgta 24272856  T

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Target: scaffold0209 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 268 - 338
Alignment:
Q  53 attaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    ||||||||||  |||||||||||||||| |||||||||||||||||| ||| ||||| |||||||||||||    
T  268 attaacaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaaaatttcattgtaatcaa 338  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 21040485 - 21040416
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||| |||||||||||||||| |||||||||||||||||| ||| || || |||||||||||||    
T  21040485 ttaacaatctccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaa 21040416  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 4814352 - 4814421
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| ||| || || |||||||||||||    
T  4814352 ttaacaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaa 4814421  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 28893819 - 28893750
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| ||| || || |||||||||||||    
T  28893819 ttaacaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaa 28893750  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 16754386 - 16754455
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| ||||||||||||| |||| ||| || || |||||||||||||    
T  16754386 ttaacaatcgccataagtacccttatagaacaatgttttactaccggtgaaaagatttcattgtaatcaa 16754455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 28330950 - 28330881
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| ||||||||||||| |||| ||| || || |||||||||||||    
T  28330950 ttaacaatcgccataagtacccttatagaacaatgttttactaccggtgaaaagatttcattgtaatcaa 28330881  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 25682962 - 25682893
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||| ||||| ||||||| |||||||||| ||| || || |||||||||||||    
T  25682962 ttaacaatcgccataagtacctttatagaacaatgctttaccaccggtgaaaagatttcattgtaatcaa 25682893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 26401385 - 26401306
Alignment:
Q  39 tcaagattgtactgattaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgta 118  Q
    ||||||||| | ||||| |||||   |||||||| ||||||  |||||||||| ||||||| |||||| |||||||||||    
T  26401385 tcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccaccggtgagaatatctcattgta 26401306  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 40827305 - 40827259
Alignment:
Q  65 cataagtacccttataaaacaatgttttaccaccgatgagaaaatct 111  Q
    ||||||||||||||| ||||||||||||| ||| | |||||||||||    
T  40827305 cataagtacccttattaaacaatgttttaacactggtgagaaaatct 40827259  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 22348101 - 22348170
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||| ||| || || |||||||||||||    
T  22348101 ttaacaatcgtcataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaa 22348170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 13881794 - 13881725
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| ||| || || |||||||||||||    
T  13881794 ttaacaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaa 13881725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 17691978 - 17692047
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| ||| || || |||||||||||||    
T  17691978 ttaacaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaa 17692047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 25944724 - 25944655
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| ||| || || |||||||||||||    
T  25944724 ttaacaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaa 25944655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 35203189 - 35203258
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| ||| || || |||||||||||||    
T  35203189 ttaacaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaa 35203258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 24434323 - 24434270
Alignment:
Q  65 cataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgta 118  Q
    |||||||| ||||||  |||||||||| ||||||| |||||| |||||||||||    
T  24434323 cataagtatccttatggaacaatgtttcaccaccggtgagaatatctcattgta 24434270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 2396381 - 2396503
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaaatctctt-aacccgagaaaaacccttagcc 152  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| |||||| || |||||||||| ||||| |||  ||| ||| ||||||||| ||     
T  2396381 ttaacaatcgccataagtacccttatagaacaatgttttaccaccggtgagaagatttcattgtaat-aaatcccttccacctgagtaaaaccctttgct 2396479  T
Q  153 acaactcttgttttatactttggt 176  Q
    |||| |||||  |||||| |||||    
T  2396480 acaagtcttgccttataccttggt 2396503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 9524783 - 9524714
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| ||| || || |||||||||||||    
T  9524783 ttaacaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaa 9524714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 47702072 - 47701993
Alignment:
Q  39 tcaagattgtactgattaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgta 118  Q
    ||||||||| | ||||| |||||   |||||||| ||||||  |||||||||| ||||||| |||||| |||||||||||    
T  47702072 tcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccaccggtgagaagatctcattgta 47701993  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 10095932 - 10096001
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| ||| || || |||||||||||||    
T  10095932 ttaacaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaa 10096001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 10202818 - 10202887
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| ||| || || |||||||||||||    
T  10202818 ttaacaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaa 10202887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 10900064 - 10899995
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| ||| || || |||||||||||||    
T  10900064 ttaacaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaa 10899995  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 10609910 - 10609968
Alignment:
Q  65 cataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||||||||| |||||||||||||||||| ||| || || |||||||||||||    
T  10609910 cataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaa 10609968  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 47880014 - 47880084
Alignment:
Q  53 attaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    ||||||||||  |||||||||||||||| ||||||||||||||| || ||| || || |||||||||||||    
T  47880014 attaacaatcgccataagtacccttatagaacaatgttttaccatcggtgaaaagatttcattgtaatcaa 47880084  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 16460519 - 16460450
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| ||||||||||||| |||| ||| || || |||||||||||||    
T  16460519 ttaacaatcgccataagtacccttatagaacaatgttttactaccggtgaaaagatttcattgtaatcaa 16460450  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 54191563 - 54191494
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| |||||||||| ||||||| ||| || || |||||||||||||    
T  54191563 ttaacaatcgccataagtacccttatagaacaatgtttcaccaccggtgaaaagatttcattgtaatcaa 54191494  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 15315372 - 15315250
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaaatctctt-aacccgagaaaaacccttagcc 152  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| ||| || || |||||||| || |||| ||| |||| ||| ||||||||| ||     
T  15315372 ttaacaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtagtc-aatcccttcaacctgagtaaaaccctttgct 15315274  T
Q  153 acaactcttgttttatactttggt 176  Q
    |||| |||||  |||||| |||||    
T  15315273 acaagtcttgccttataccttggt 15315250  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 4568398 - 4568329
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| |||||||||||| ||||| ||| || || |||||||||||||    
T  4568398 ttaacaatcgccataagtacccttatagaacaatgttttatcaccggtgaaaagatttcattgtaatcaa 4568329  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 16637216 - 16637147
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||  |||||||||||||||||| ||| || || |||||||||||||    
T  16637216 ttaacaatcgccataagtacccttattgaacaatgttttaccaccgctgaaaagatttcattgtaatcaa 16637147  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 3791168 - 3791089
Alignment:
Q  39 tcaagattgtactgattaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgta 118  Q
    ||||||||| | ||||| |||||   |||||||| ||||||  |||||||||| ||||||| |||||| |||||||||||    
T  3791168 tcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccaccggtgagaagatctcattgta 3791089  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 5144960 - 5145044
Alignment:
Q  39 tcaagattgtactgattaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    ||||||||| | ||||| |||||   |||||||| | ||||  |||||||||| ||||||| |||||| ||||||||||| ||||    
T  5144960 tcaagattgaattgattcacaataaccataagtatcgttatggaacaatgtttcaccaccggtgagaagatctcattgtagtcaa 5145044  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 2739260 - 2739138
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaaatctctt-aacccgagaaaaacccttagcc 152  Q
    |||||||||  |||||||||||||||| ||||||||||||||| || ||| || || ||||||||||| |||| |||  ||| ||| ||||||||||||     
T  2739260 ttaacaatcgccataagtacccttatagaacaatgttttaccagcggtgaaaagatttcattgtaatc-aatcccttccacctgagtaaaacccttagct 2739162  T
Q  153 acaactcttgttttatactttggt 176  Q
    |||| |||||  |||||| |||||    
T  2739161 acaagtcttgccttataccttggt 2739138  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 17935139 - 17935070
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| ||| || || |||||||| ||||    
T  17935139 ttaacaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtagtcaa 17935070  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 20051887 - 20051956
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| ||| || || ||||| |||||||    
T  20051887 ttaacaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattataatcaa 20051956  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 22714360 - 22714429
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| ||||||||||||| |||| ||| || || |||||||||||||    
T  22714360 ttaacaatcgccataagtacccttatagaacaatgttttactaccggtgaaaagatttcattgtaatcaa 22714429  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 39685302 - 39685233
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| ||||||||||||| |||| ||| || || |||||||||||||    
T  39685302 ttaacaatcgccataagtacccttatagaacaatgttttactaccggtgaaaagatttcattgtaatcaa 39685233  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 31058012 - 31058089
Alignment:
Q  41 aagattgtactgattaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgta 118  Q
    ||||||| | ||||| |||||  ||||||||| ||||||  |||||||||| |||||||||||||| |||| ||||||    
T  31058012 aagattgaattgattcacaatggtcataagtatccttatggaacaatgtttcaccaccgatgagaagatctgattgta 31058089  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 39484809 - 39484888
Alignment:
Q  39 tcaagattgtactgattaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgta 118  Q
    ||||||||| | ||||| |||||   |||||||| ||||||  |||||||||| ||||||| |||||| |||||||||||    
T  39484809 tcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccaccggtgagaatatctcattgta 39484888  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 39486246 - 39486167
Alignment:
Q  39 tcaagattgtactgattaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgta 118  Q
    ||||||||| | ||||| |||||   |||||||| ||||||  |||||||||| ||||||| |||||| |||||||||||    
T  39486246 tcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccaccggtgagaagatctcattgta 39486167  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 25450812 - 25450743
Alignment:
Q  54 ttaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaa 123  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| ||| || || || ||||||||||    
T  25450812 ttaacaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcgttgtaatcaa 25450743  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 228
Target Start/End: Complemental strand, 24558619 - 24558430
Alignment:
Q  39 tcaagattgtactgattaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaaatctcttaacccgag 138  Q
    ||||||||| | ||||| |||||   |||||||| ||||||  |||||||||| ||||||| |||||| ||||||||||| ||||  | ||  ||  |||    
T  24558619 tcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccaccggtgagaagatctcattgtagtcaatcccctccacttgag 24558520  T
Q  139 aaaaacccttagccacaactcttgttttatactttggttctttaattctctaaataccttctttgttcttgaagatctacttacatccaa 228  Q
      |||||||| ||||||| ||||| ||| ||| | ||  ||| || || |  ||||||||| || |||||||||||| |||| |||||||    
T  24558519 tgaaacccttggccacaagtcttgctttgtacctaggaccttcaactcccggaataccttcctttttcttgaagatccacttgcatccaa 24558430  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 228
Target Start/End: Complemental strand, 24599651 - 24599462
Alignment:
Q  39 tcaagattgtactgattaacaatcttcataagtacccttataaaacaatgttttaccaccgatgagaaaatctcattgtaatcaaatctcttaacccgag 138  Q
    ||||||||| | ||||| |||||   |||||||| ||||||  |||||||||| ||||||| |||||| ||||||||||| ||||  | ||  ||  |||    
T  24599651 tcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccaccggtgagaagatctcattgtagtcaatcccctccacttgag 24599552  T
Q  139 aaaaacccttagccacaactcttgttttatactttggttctttaattctctaaataccttctttgttcttgaagatctacttacatccaa 228  Q
      |||||||| ||||||| ||||| ||| ||| | ||  ||| || || |  ||||||||| || |||||||||||| |||| |||||||    
T  24599551 tgaaacccttggccacaagtcttgctttgtacctaggaccttcaactcccggaataccttcctttttcttgaagatccacttgcatccaa 24599462  T

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Target: scaffold0559 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0559
Description:

Target: scaffold0559; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 4881 - 4835
Alignment:
Q  65 cataagtacccttataaaacaatgttttaccaccgatgagaaaatct 111  Q
    ||||||||||||||| ||||||||||||| ||| | |||||||||||    
T  4881 cataagtacccttattaaacaatgttttaacactggtgagaaaatct 4835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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