View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_36 (Length: 330)
Name: NF10103_low_36
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1632341 - 1632565
Alignment:
| Q |
1 |
agcagactcggaaatggca-gcccaaagataatcaagacggcataggttcatctaaatctttcgaagctccggtgatcaatgacgttgcagctgacaata |
99 |
Q |
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| T |
1632341 |
agcagaatcagaaatggcaagcccaaagataatccagacggcataggttcatctaaagcttttgaagctccggtgatcaatgacgttgcagctgacaata |
1632440 |
T |
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| Q |
100 |
caataccgcaacctgatgctattcaattactatcacaatctggtgccacaaccggacaggaggaggaacggccaattgatgtgtccactccggattttca |
199 |
Q |
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| T |
1632441 |
caataccgcggcctgatgttattcaattactatcacaatctggtgccccaaccggataggaggaggaacggccaattgatgtgtccactccggagtttca |
1632540 |
T |
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| Q |
200 |
agtggaagagcacaaggtcccgcag |
224 |
Q |
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| T |
1632541 |
aatggaagagcacacggtcctgcag |
1632565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 206 - 311
Target Start/End: Original strand, 1632582 - 1632687
Alignment:
| Q |
206 |
agagcacaaggtcccgcagacagacaaagagcccttggctgtaacttctgaggtacagaatgttgaatatgaatttcacaaggagcggttacctagtaca |
305 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1632582 |
agagcacacggtccagcagacagacaaagagcccttggctgtaacttctgaggtacagaatgttgaatatgaatttcacaaggagcggttacctagtaca |
1632681 |
T |
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| Q |
306 |
tcagtc |
311 |
Q |
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|||||| |
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| T |
1632682 |
tcagtc |
1632687 |
T |
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