View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10103_low_38 (Length: 324)

Name: NF10103_low_38
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10103_low_38
NF10103_low_38
[»] chr3 (16 HSPs)
chr3 (7-309)||(10515956-10516258)
chr3 (107-306)||(10657329-10657527)
chr3 (1-309)||(11410753-11411063)
chr3 (1-309)||(43921729-43922035)
chr3 (114-309)||(21408750-21408952)
chr3 (101-269)||(26565410-26565577)
chr3 (182-301)||(14218476-14218595)
chr3 (90-147)||(27044218-27044275)
chr3 (183-231)||(49861116-49861164)
chr3 (185-303)||(27063816-27063933)
chr3 (89-131)||(27063988-27064030)
chr3 (85-118)||(49861210-49861243)
chr3 (92-148)||(17715718-17715774)
chr3 (92-148)||(19016947-19017003)
chr3 (183-231)||(27109302-27109350)
chr3 (183-215)||(27109700-27109732)
[»] chr5 (5 HSPs)
chr5 (8-307)||(40837975-40838273)
chr5 (190-297)||(32676610-32676716)
chr5 (200-309)||(38989237-38989342)
chr5 (93-153)||(38989134-38989195)
chr5 (1-97)||(32676430-32676528)
[»] chr7 (10 HSPs)
chr7 (31-309)||(37338578-37338855)
chr7 (14-237)||(10678433-10678658)
chr7 (187-309)||(46532924-46533044)
chr7 (237-309)||(44572486-44572558)
chr7 (92-156)||(45215897-45215961)
chr7 (36-309)||(27616395-27616659)
chr7 (45-158)||(22291029-22291143)
chr7 (253-307)||(45215999-45216053)
chr7 (253-309)||(6439809-6439865)
chr7 (253-308)||(22290933-22290988)
[»] chr6 (13 HSPs)
chr6 (65-309)||(12843973-12844217)
chr6 (75-293)||(57082-57300)
chr6 (92-309)||(14494315-14494531)
chr6 (100-309)||(17540087-17540295)
chr6 (187-309)||(1255633-1255754)
chr6 (92-156)||(19294551-19294615)
chr6 (45-137)||(34011035-34011128)
chr6 (45-137)||(34013722-34013815)
chr6 (94-267)||(34709064-34709238)
chr6 (183-309)||(19542208-19542332)
chr6 (10-130)||(1255453-1255575)
chr6 (95-148)||(14998569-14998622)
chr6 (264-309)||(19294452-19294497)
[»] chr4 (12 HSPs)
chr4 (7-309)||(17732843-17733148)
chr4 (65-309)||(40289003-40289244)
chr4 (95-307)||(45612316-45612530)
chr4 (182-300)||(31734573-31734688)
chr4 (92-156)||(54305841-54305905)
chr4 (1-141)||(658258-658401)
chr4 (183-231)||(3419998-3420046)
chr4 (90-139)||(18198688-18198737)
chr4 (183-275)||(658446-658537)
chr4 (65-137)||(55680921-55680993)
chr4 (65-156)||(29987892-29987982)
chr4 (90-139)||(44507913-44507962)
[»] chr8 (11 HSPs)
chr8 (17-277)||(18602871-18603130)
chr8 (36-227)||(15850283-15850478)
chr8 (65-306)||(28421114-28421354)
chr8 (65-309)||(15131815-15132060)
chr8 (199-307)||(44502363-44502469)
chr8 (185-309)||(1226126-1226248)
chr8 (65-141)||(31772664-31772740)
chr8 (257-310)||(15850496-15850549)
chr8 (238-309)||(18393572-18393643)
chr8 (263-309)||(37855230-37855276)
chr8 (91-131)||(18393439-18393479)
[»] chr2 (17 HSPs)
chr2 (92-309)||(26576131-26576349)
chr2 (92-309)||(34409458-34409674)
chr2 (194-306)||(44649945-44650056)
chr2 (92-251)||(9929777-9929938)
chr2 (187-309)||(27004105-27004228)
chr2 (65-156)||(32200690-32200781)
chr2 (95-309)||(4747960-4748172)
chr2 (93-231)||(13039025-13039164)
chr2 (75-148)||(41849228-41849301)
chr2 (89-153)||(17651476-17651540)
chr2 (243-309)||(9929701-9929767)
chr2 (189-230)||(32200816-32200857)
chr2 (264-309)||(32200870-32200915)
chr2 (89-152)||(18724618-18724681)
chr2 (264-309)||(13037378-13037423)
chr2 (92-152)||(15989943-15990003)
chr2 (185-229)||(15990038-15990082)
[»] chr1 (12 HSPs)
chr1 (9-309)||(48632377-48632675)
chr1 (75-309)||(32740919-32741149)
chr1 (68-309)||(23431937-23432180)
chr1 (195-308)||(126323-126435)
chr1 (36-229)||(18488357-18488551)
chr1 (186-309)||(9148970-9149090)
chr1 (238-309)||(3387725-3387796)
chr1 (185-306)||(7021538-7021661)
chr1 (92-137)||(3387883-3387928)
chr1 (253-309)||(18476576-18476633)
chr1 (100-152)||(126456-126508)
chr1 (101-141)||(3955178-3955218)
[»] scaffold0019 (1 HSPs)
scaffold0019 (185-234)||(70040-70089)
[»] scaffold0002 (1 HSPs)
scaffold0002 (90-139)||(289060-289109)
[»] scaffold0325 (1 HSPs)
scaffold0325 (205-309)||(12948-13051)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 10515956 - 10516258
Alignment:
Q  7 ctatgacacttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattgtttt--ctttgattcgacatttctaggaccggtgtccgacac 104  Q
    |||||||||||||| ||||||||||||| |||||||||| ||||| ||||||||||||||||  ||||||||||||| |||||||  |||||||||||||    
T  10515956 ctatgacacttgtccgatacgtgttggacaactaaaatcagtgtcttaaataaaattgttttttctttgattcgacacttctagggtcggtgtccgacac 10516055  T
Q  105 ctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagatacaagagttacat 204  Q
    || ||||| ||||||||||| ||||||||||||||||| |||||||||||||||       ||||||||||| |||||||||||||||||||||||||||    
T  10516056 ctgtataatactcatacgagtcgtgtcagacaactcatgcaaatatctaaaata-ttttttctctcttacttccatgtaccgtagatacaagagttacat 10516154  T
Q  205 atgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgataggagttgaataaataaaggtcaa 304  Q
    ||||||| ||||||||| ||||||||| ||  | |||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  10516155 atgttttaaaaaatgttaatcaattagggggta-atatacattatagcttattataacatttttaacctttttgataggagttgaataaataatggtcaa 10516253  T
Q  305 atact 309  Q
    |||||    
T  10516254 atact 10516258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 107 - 306
Target Start/End: Original strand, 10657329 - 10657527
Alignment:
Q  107 atataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnn-ctctcttactttcatgtaccgtagatacaagagttacata 205  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||||| |||||||||||||||||||| |||||||    
T  10657329 atataacactcatacgagccgtgtcagacaactcatataaatatctaaaatattttttttctctcttacttccatgtaccgtagatacaagatttacata 10657428  T
Q  206 tgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgataggagttgaataaataaaggtcaaa 305  Q
    |||||||||||||||||||||||||||||  | | ||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10657429 tgttttgaaaaatgttgatcaattagaggcta-aaatacattacatatgattataacatttttaacttttttga-aggagttgaataaataaaggtcaaa 10657526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 11411063 - 11410753
Alignment:
Q  1 acacttctatgacacttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattgttttctttg----attcgacatttctaggaccggtg 96  Q
    ||||| ||||||||||||||||| || ||| ||| ||||||||||| |||||||||||||||  |||| |||     |||||||| | ||||||||||||    
T  11411063 acactcctatgacacttgtctgacacatgtcggacaactaaaatcgatgtcctaaataaaatatttttttttacttaattcgacactcctaggaccggtg 11410964  T
Q  97 tccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagatacaag 196  Q
    || ||||||||||||||||||||||||||| |||||||||||| || |||||||| |||| |       ||||||||||| ||  |||||||||||||||    
T  11410963 tc-gacacctatataacactcatacgagccatgtcagacaacttatgcaaatatcgaaaacatttttttctctcttacttccacataccgtagatacaag 11410865  T
Q  197 agttacatatgttttgaaaaatgttgatcaatta-gaggtaatatatacattacagctgattataacatttttaacttttttgataggagttgaataaat 295  Q
    ||||||||||||||||| |||||||||||||||| | ||||||| ||  ||||  | ||||||||||| ||||| | |||||||||| || |||||||||    
T  11410864 agttacatatgttttgagaaatgttgatcaattagggggtaatagat--attattgttgattataacagttttagcctttttgatagtagatgaataaat 11410767  T
Q  296 aaaggtcaaatact 309  Q
    |||||| |||||||    
T  11410766 aaaggttaaatact 11410753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 43921729 - 43922035
Alignment:
Q  1 acacttctatgacacttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattg---ttttctttgattcgacatttctaggaccggtgt 97  Q
    ||||| ||||||||||||||||| |||||| ||| ||||||||||||||||||| |||||||||   |||||||| |||| ||| | |||||||||||||    
T  43921729 acactcctatgacacttgtctgacacgtgtcggacaactaaaatcggtgtcctagataaaattgtttttttctttaattcaacactcctaggaccggtgt 43921828  T
Q  98 ccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagatacaaga 197  Q
    ||||||||  |||||||||||| ||| |||| || ||||||||| |||||||||||||  |       ||||||| ||| ||  ||| ||||||||||||    
T  43921829 ccgacacc--tataacactcat-cgaaccgtttcggacaactcagacaaatatctaaagcatttttttctctcttgcttccacatacagtagatacaaga 43921925  T
Q  198 gttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgataggagttgaataaataa 297  Q
    |||||||||||||||| |||||||||||||| || | ||  ||  ||||||||  ||||||||||||||||| |||||||||||  || |||||||||||    
T  43921926 gttacatatgttttgagaaatgttgatcaatcagggtta--attgacattacaattgattataacatttttagcttttttgatattagatgaataaataa 43922023  T
Q  298 aggtcaaatact 309  Q
    || |||||||||    
T  43922024 agatcaaatact 43922035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 114 - 309
Target Start/End: Original strand, 21408750 - 21408952
Alignment:
Q  114 actcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagatacaagagttacatatgt----- 208  Q
    |||||||||||||||||| ||||||||| |||||||||||||| |       ||||||| ||| ||  || | ||||||||||||||||||||||         
T  21408750 actcatacgagccgtgtcggacaactcaaacaaatatctaaaacatttttttctctcttgcttccacataacttagatacaagagttacatatgtacata 21408849  T
Q  209 ---tttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgataggagttgaataaataaaggtcaaa 305  Q
       ||||| ||||||||||||||||| ||  | | | ||||||||  ||||||||||||||||||| ||||| |||| || |||||||||||||||||||    
T  21408850 tgttttgagaaatgttgatcaattagggggta-acaaacattacaattgattataacatttttaaccttttttatagtagatgaataaataaaggtcaaa 21408948  T
Q  306 tact 309  Q
    ||||    
T  21408949 tact 21408952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 101 - 269
Target Start/End: Complemental strand, 26565577 - 26565410
Alignment:
Q  101 acacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagatacaagagtt 200  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |       ||||||| ||| ||  || | |||||| |||||||    
T  26565577 acacctatataacactcatacgagccgtgtcggacaactcagacaaatatctaaaacatttttttctctcttgcttccacatatcttagatataagagtt 26565478  T
Q  201 acatatgttttgaaaaatgttgatcaattagag-gtaatatatacattacagctgattataacattttta 269  Q
    ||||||||||| | |||||||||||| |||| | |||  ||| ||||||||| | |||||||||||||||    
T  26565477 acatatgtttttagaaatgttgatcatttagggagta--atagacattacagttaattataacattttta 26565410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 301
Target Start/End: Complemental strand, 14218595 - 14218476
Alignment:
Q  182 taccgtagatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacattttta-acttttttgat 280  Q
    ||||||||| |||||||| |||||| |||||| ||||||||||||||||| ||  | ||| ||||||||| |||||||||||||||||   |||||| ||    
T  14218595 taccgtagacacaagagtcacatatattttgataaatgttgatcaattagggggta-atagacattacagttgattataacatttttagtttttttttat 14218497  T
Q  281 aggagttgaataaataaaggt 301  Q
    || || | |||||||||||||    
T  14218496 agtagataaataaataaaggt 14218476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 27044275 - 27044218
Alignment:
Q  90 accggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaa 147  Q
    ||||||||||||||||| ||||||||||||||||||||||||  |||||||| |||||    
T  27044275 accggtgtccgacacctgtataacactcatacgagccgtgtcgaacaactcagacaaa 27044218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 49861164 - 49861116
Alignment:
Q  183 accgtagatacaagagttacatatgttttgaaaaatgttgatcaattag 231  Q
    ||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  49861164 accgtagatacaagagttacataagttttgagatatgttgatcaattag 49861116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 303
Target Start/End: Complemental strand, 27063933 - 27063816
Alignment:
Q  185 cgtagatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgatagga 284  Q
    |||||||| ||||||||||||| | |||| |||||||||||||||  |||   |||| | |||  || | |||| |||||||||| ||||| ||| || |    
T  27063933 cgtagatataagagttacatatatgttgagaaatgttgatcaatt-taggagttatagaaatttaagttaattacaacatttttagcttttatgacagta 27063835  T
Q  285 gttgaataaataaaggtca 303  Q
    | |||||||||||||||||    
T  27063834 gatgaataaataaaggtca 27063816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 27064030 - 27063988
Alignment:
Q  89 gaccggtgtccgacacctatataacactcatacgagccgtgtc 131  Q
    |||||||||| |||||||||||||||||| ||||||| |||||    
T  27064030 gaccggtgtctgacacctatataacactcttacgagctgtgtc 27063988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 49861243 - 49861210
Alignment:
Q  85 ctaggaccggtgtccgacacctatataacactca 118  Q
    |||||||||||||| |||||||||||||||||||    
T  49861243 ctaggaccggtgtctgacacctatataacactca 49861210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 17715718 - 17715774
Alignment:
Q  92 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaat 148  Q
    ||||||| |||||||||||||||||||||| |||  |||  ||||||||| ||||||    
T  17715718 cggtgtctgacacctatataacactcatacaagcattgttggacaactcaaacaaat 17715774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 19016947 - 19017003
Alignment:
Q  92 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaat 148  Q
    ||||||| |||||||||||||||||||||| |||  |||  ||||||||| ||||||    
T  19016947 cggtgtctgacacctatataacactcatacaagcattgttggacaactcaaacaaat 19017003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 27109302 - 27109350
Alignment:
Q  183 accgtagatacaagagttacatatgttttgaaaaatgttgatcaattag 231  Q
    |||||| ||||||| |||||||||||||||  | |||||||||||||||    
T  27109302 accgtaaatacaagggttacatatgttttgtgatatgttgatcaattag 27109350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 27109700 - 27109732
Alignment:
Q  183 accgtagatacaagagttacatatgttttgaaa 215  Q
    |||||| ||||||||||||||||||||||||||    
T  27109700 accgtaaatacaagagttacatatgttttgaaa 27109732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 40838273 - 40837975
Alignment:
Q  8 tatgacacttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattgttttct--ttgattcgacatttctaggaccggtgtccgacacc 105  Q
    ||||||| ||||| || | |||||||| ||| |||||| |||||||||||||||||||||| |  || |||||||| |  | |||||||||||||||| |    
T  40838273 tatgacatttgtccgacatgtgttggaaaaccaaaatcagtgtcctaaataaaattgttttttagttaattcgacactctttggaccggtgtccgacatc 40838174  T
Q  106 tatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagatacaagagttacata 205  Q
    |||||||||||||||| || |||||| ||||||||| |||||| ||||||| |         ||||| ||| ||  ||||||||||||||||||||||||    
T  40838173 tatataacactcatacaagtcgtgtcggacaactcagacaaatgtctaaaacattttttttcctcttgcttccagataccgtagatacaagagttacata 40838074  T
Q  206 tgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgataggagttgaataaataaaggtcaaa 305  Q
    |||||||| ||||||||||||||||| ||||  ||| |||||| || | ||||||||||||||| | |||||||||| || |||||||||||||||||||    
T  40838073 tgttttgagaaatgttgatcaattaggggta--ataaacattatagtttattataacatttttagc-tttttgatagtagatgaataaataaaggtcaaa 40837977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 190 - 297
Target Start/End: Original strand, 32676610 - 32676716
Alignment:
Q  190 atacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgataggagttga 289  Q
    |||||||||||||||||||||||| |||||||| |||||||| || | |||| |||||| || |||||||||||||||||||||||||||||| || |||    
T  32676610 atacaagagttacatatgttttgagaaatgttgttcaattaggggga-tatagacattaaagttgattataacatttttaacttttttgatagtagatga 32676708  T
Q  290 ataaataa 297  Q
    ||||||||    
T  32676709 ataaataa 32676716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 38989237 - 38989342
Alignment:
Q  200 tacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgataggagttgaataaataaag 299  Q
    ||||||||||| || ||||||||||||||||| |||  |||| ||||||    |||||||| ||||||||| | ||||||||| || ||||||||||||     
T  38989237 tacatatgtttcgataaatgttgatcaattaggggt--tatagacattatt--tgattatatcatttttaaatcttttgatagtagatgaataaataaaa 38989332  T
Q  300 gtcaaatact 309  Q
    ||||||||||    
T  38989333 gtcaaatact 38989342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 38989134 - 38989195
Alignment:
Q  93 ggtgtccgacacctatataacactcatacgagccgtgtcagac-aactcatacaaatatcta 153  Q
    ||||| ||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||||    
T  38989134 ggtgttcgacaactatataacactcatacgagccgtgtcggacaaactcagacaaatatcta 38989195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 32676430 - 32676528
Alignment:
Q  1 acacttctatgacacttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattg--ttttctttgattcgacatttctaggaccggtgt 97  Q
    ||||| |||||||||||||  || |||||||||| | |||  | || |||||||||||||||||  ||||||||  ||||||| | |||||||||||||    
T  32676430 acactcctatgacacttgtacgacacgtgttggacagctatgaccgatgtcctaaataaaattgttttttctttacttcgacactcctaggaccggtgt 32676528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 31 - 309
Target Start/End: Original strand, 37338578 - 37338855
Alignment:
Q  31 tggataactaaaatcggtgtcctaaataaaattgtttt--ctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgt 128  Q
    |||||||||||| |||||||| ||||||||||||||||  |||| |||| ||| | ||||||| |  ||| |||| |||||||| ||||||||||| |||    
T  37338578 tggataactaaattcggtgtcttaaataaaattgttttttctttaattcaacactcctaggactgacgtctgacatctatataatactcatacgagtcgt 37338677  T
Q  129 gtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagatacaagagttacatatgttttgaaaaatgttgatcaat 228  Q
    | ||||||||||| |||||||||| ||| |       ||||||| ||| ||  |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  37338678 gacagacaactcagacaaatatctgaaacatttttt-ctctcttgcttccacataccgtagatacaagagttacatatgctttgagaaatgttgatcaat 37338776  T
Q  229 tagaggtaatatatacattacagctgattataacatttttaacttttttgataggagttgaataaataaaggtcaaatact 309  Q
    ||| | |  | || |||||| || |||| ||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  37338777 tagggat--tttaaacattaaagttgataataacatttttaacttttttgatagtagatgaataaataaaggtcaaatact 37338855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 10678658 - 10678433
Alignment:
Q  14 acttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattgttttctt---tgattcgacatttctaggaccggtgtccgacacctatat 110  Q
    ||||||| || |||||||||| || ||||||||||||||| |||||||||||||| ||   | |||| ||| | ||||||| ||||||||||||||||||    
T  10678658 acttgtccgacacgtgttggaaaattaaaatcggtgtcctgaataaaattgtttttttatttaattcaacactcctaggactggtgtccgacacctatat 10678559  T
Q  111 aacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagatacaagagttacatatgttt 210  Q
    ||||||||||||| ||||||| ||||||||| |||||||| | ||| |        |||||| ||| ||  ||||||||||||||||||||| |||||||    
T  10678558 aacactcatacgaaccgtgtctgacaactcagacaaatat-ttaaacatttctttttctcttgcttccacataccgtagatacaagagttacgtatgttt 10678460  T
Q  211 tgaaaaatgttgatcaattagaggtaa 237  Q
    ||| |||| |||||||||||| |||||    
T  10678459 tgagaaatattgatcaattaggggtaa 10678433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 187 - 309
Target Start/End: Complemental strand, 46533044 - 46532924
Alignment:
Q  187 tagatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgataggagt 286  Q
    |||||||||||| ||||||| ||||||  |||||||||||||||| |||  |||| ||||||||  ||||||||||||||||| ||||||||| || ||     
T  46533044 tagatacaagagctacatatattttgaggaatgttgatcaattaggggt--tataaacattacaattgattataacatttttagcttttttgacagcagg 46532947  T
Q  287 tgaataaataaaggtcaaatact 309  Q
    |||||||| || |||||||||||    
T  46532946 tgaataaacaatggtcaaatact 46532924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 44572486 - 44572558
Alignment:
Q  237 atatatacattacagctgattataacatttttaacttttttgataggagttgaataaataaaggtcaaatact 309  Q
    ||||||||||||||  |||||||| |||||||| |||||||||||| || |||||||||||||||||||||||    
T  44572486 atatatacattacaattgattatatcatttttagcttttttgatagtagatgaataaataaaggtcaaatact 44572558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 45215897 - 45215961
Alignment:
Q  92 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaa 156  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||| ||  |||||||||||||    
T  45215897 cggtgtccgacacctatgtaacactcatacgagccgtgtcggacaacccagtcaaatatctaaaa 45215961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 309
Target Start/End: Complemental strand, 27616659 - 27616395
Alignment:
Q  36 aactaaaatcggtgtcctaaataaaattgttttctttgat---tcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtca 132  Q
    |||||| | |||||||||||||||| ||||||||||   |   |||||| | |||||| ||||||||| ||||||||| |||||||||| |||||||||     
T  27616659 aactaagaccggtgtcctaaataaatttgttttcttctttacatcgacactcctaggaacggtgtccggcacctatatgacactcatacaagccgtgtcg 27616560  T
Q  133 gacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagatacaagagttacatatgttttgaaaaatgttgatcaattaga 232  Q
    ||||||||| |||||||||| ||| |       ||||||| ||| ||     ||||||||||||||||           || ||||| || ||||||||     
T  27616559 gacaactcagacaaatatctgaaacatttttttctctcttgcttccacacgtcgtagatacaagagtt-----------gagaaatgatggtcaattagg 27616471  T
Q  233 ggtaatatatacattacagctgattataacatttttaacttttttgataggagttgaataaataaaggtcaaatact 309  Q
    ||   |||| |||||| || ||||||||||||||||| ||||| |||||| || || ||||||||| ||||||||||    
T  27616470 gggt-tatagacattaaagttgattataacatttttagcttttctgatagtagatgtataaataaaagtcaaatact 27616395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 22291143 - 22291029
Alignment:
Q  45 cggtgtcctaaataaaa-ttgttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcata 143  Q
    |||||||||||||||   || ||||||||  ||||||| | ||| || |||| |||||||| |||||| ||||||||||||||||||  ||||||||  |    
T  22291143 cggtgtcctaaataattgtttttttctttacttcgacactcctacgatcggtatccgacacgtatataccactcatacgagccgtgtaggacaactcgca 22291044  T
Q  144 caaatatctaaaata 158  Q
    ||| |||||||||||    
T  22291043 caattatctaaaata 22291029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 45215999 - 45216053
Alignment:
Q  253 tgattataacatttttaacttttttgataggagttgaataaataaaggtcaaata 307  Q
    |||||||| |||||||| ||||||||| || || |||||||||||||||||||||    
T  45215999 tgattatatcatttttagcttttttgacagtagatgaataaataaaggtcaaata 45216053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 6439865 - 6439809
Alignment:
Q  253 tgattataacatttttaacttttttgataggagttgaataaataaaggtcaaatact 309  Q
    |||||| |||||||||| |||||| ||||| ||||||||||||| | ||||||||||    
T  6439865 tgattacaacatttttatctttttcgatagtagttgaataaatagatgtcaaatact 6439809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 308
Target Start/End: Complemental strand, 22290988 - 22290933
Alignment:
Q  253 tgattataacatttttaacttttttgataggagttgaataaataaaggtcaaatac 308  Q
    ||||||||  ||||||| |||||||||||| || | ||||||||||||||||||||    
T  22290988 tgattatataatttttagcttttttgatagtagattaataaataaaggtcaaatac 22290933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 65 - 309
Target Start/End: Complemental strand, 12844217 - 12843973
Alignment:
Q  65 ttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnn 164  Q
    ||||||||  ||||||| | ||| || || |||| ||||| |||||||||||||||||||| ||||||||||||||| ||| |||||||||| |          
T  12844217 ttttctttacttcgacactcctaagatcgatgtctgacacttatataacactcatacgagctgtgtcagacaactcacacagatatctaaaacaatattt 12844118  T
Q  165 n--ctctcttactttcatgtaccgtagatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataac 262  Q
       ||||||| ||| || | ||| ||||||||||||||||||||||||||| ||||||||||||||||| |||  |||| |||||| || |||||||| |    
T  12844117 tttctctcttgcttccacgcaccatagatacaagagttacatatgttttgagaaatgttgatcaattaggggt--tatacacattatagttgattatatc 12844020  T
Q  263 atttttaacttttttgataggagttgaataaataaaggtcaaatact 309  Q
    ||||||| |||||||||||| || |||||||||||||||||||||||    
T  12844019 atttttagcttttttgatagtagatgaataaataaaggtcaaatact 12843973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 75 - 293
Target Start/End: Complemental strand, 57300 - 57082
Alignment:
Q  75 ttcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnn-ctctctta 173  Q
    ||||||||| |||||| || |||| ||||||||| |||||||||||||||||||||| ||||||| | | ||||||||||| ||        |||||||     
T  57300 ttcgacattcctaggatcgatgtctgacacctatgtaacactcatacgagccgtgtcggacaactaagataaatatctaaattattatttttctctcttg 57201  T
Q  174 ctttcatgtaccgtagatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaactt 273  Q
    ||| ||  ||||||||||||||||||||||||||||| || ||||||||||||| ||||||   |||| |||||| || ||||||||||||||||| |||    
T  57200 cttccacataccgtagatacaagagttacatatgtttggagaaatgttgatcaactagagg-gttatagacattaaagttgattataacatttttacctt 57102  T
Q  274 ttttgataggagttgaataa 293  Q
    ||||||||| || |||||||    
T  57101 ttttgatagtagatgaataa 57082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 92 - 309
Target Start/End: Original strand, 14494315 - 14494531
Alignment:
Q  92 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnn-ctctcttactttcatgtaccgtaga 190  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||| |        |||| ||  || ||   ||| ||||    
T  14494315 cggtgtccgacacctatataacactaatacgagccgtgtcggacaactcacacaaatatcttaaacaattgttttctctattgtttccacacaccataga 14494414  T
Q  191 tacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgataggagttgaa 290  Q
    ||||||| ||||||||||||||| ||||||||||||||||| |||  |||| |||| | || |||||||| ||||||||||||||||||||  ||  |||    
T  14494415 tacaagaattacatatgttttgagaaatgttgatcaattaggggt--tatagacatcatagttgattatatcatttttaacttttttgataatagacgaa 14494512  T
Q  291 taaataaaggtcaaatact 309  Q
    |||||||||||||||||||    
T  14494513 taaataaaggtcaaatact 14494531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 100 - 309
Target Start/End: Complemental strand, 17540295 - 17540087
Alignment:
Q  100 gacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnn-ctctcttactttcatgtaccgtagatacaagag 198  Q
    ||||||||||||||||||||| || ||||||| ||||||||| |||||||||||||| |        ||||||| ||| |    ||| ||||||||||||    
T  17540295 gacacctatataacactcatatgaaccgtgtcggacaactcagacaaatatctaaaacaatttttttctctcttgcttccgcacaccatagatacaagag 17540196  T
Q  199 ttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgataggagttgaataaataaa 298  Q
    ||||||||||||||| ||||||||||||||||| |||  |||| |  ||| || |||||||| |||||||| |||||||||||| || | ||||||||||    
T  17540195 ttacatatgttttgagaaatgttgatcaattaggggt--tataaaagttatagttgattatatcatttttagcttttttgatagtagataaataaataaa 17540098  T
Q  299 ggtcaaatact 309  Q
    |||||||||||    
T  17540097 ggtcaaatact 17540087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 187 - 309
Target Start/End: Original strand, 1255633 - 1255754
Alignment:
Q  187 tagatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgataggagt 286  Q
    |||||||||||| |||||| |||||||  |||||||||||||||| ||   |||| ||||||||| ||||||||||||||||| |||||||||||| ||     
T  1255633 tagatacaagagctacataggttttgaggaatgttgatcaattagggggt-tatagacattacagttgattataacatttttagcttttttgatagcaga 1255731  T
Q  287 tgaataaataaaggtcaaatact 309  Q
    |  ||||||||| ||||||||||    
T  1255732 tacataaataaatgtcaaatact 1255754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 19294615 - 19294551
Alignment:
Q  92 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaa 156  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||| ||| ||||||||||||||    
T  19294615 cggtgtccgacacctgtataacactcatacgagccgtgtcggacaagtcacacaaatatctaaaa 19294551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 34011035 - 34011128
Alignment:
Q  45 cggtgtcctaaataaaa-ttgttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaa 137  Q
    |||||||||||||||   || ||||||||  ||||||| | ||| ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  34011035 cggtgtcctaaataattgtttttttctttacttcgacactcctacgattggtgtccgacacctatataacactcatacgagccgtgtcagacaa 34011128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 34013815 - 34013722
Alignment:
Q  45 cggtgtcctaaataaaa-ttgttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaa 137  Q
    |||||||||||||||   || ||||||||  ||||||| | ||| ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  34013815 cggtgtcctaaataattgtttttttctttacttcgacactcctacgattggtgtccgacacctatataacactcatacgagccgtgtcagacaa 34013722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 267
Target Start/End: Complemental strand, 34709238 - 34709064
Alignment:
Q  94 gtgtccgacacctatataacactcata--cgagccgtgtcagacaactcatacaaatatctaaaa-tannnnnnnctctcttactttcatgtaccgtaga 190  Q
    |||||||||||||||||||||||||||  ||||  ||||| || |||| | ||||||||||| || ||       ||||||| ||||||    || ||||    
T  34709238 gtgtccgacacctatataacactcatatacgagttgtgtcggaaaacttacacaaatatctacaactacttttttctctcttgctttcacacgccataga 34709139  T
Q  191 tacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttt 267  Q
    || |||||||| |||| |||||||||||||||||||||||| |||  ||||||||||| || |||||||| ||||||    
T  34709138 tataagagttatatatattttgaaaaatgttgatcaattaggggt--tatatacattatagttgattatatcatttt 34709064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 309
Target Start/End: Complemental strand, 19542332 - 19542208
Alignment:
Q  183 accgtagatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgatag 282  Q
    |||||| ||||||||||||||| |||||||| |||| |||| ||||||  ||| | | |||  ||| || ||||||||||| ||||| | || |||||||    
T  19542332 accgtacatacaagagttacatttgttttgagaaatattgaacaattaagggttagagata--ttaaagttgattataacaattttagcattcttgatag 19542235  T
Q  283 gagttgaataaataaaggtcaaatact 309  Q
     || |||||||||||||| ||||||||    
T  19542234 tagatgaataaataaaggacaaatact 19542208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 1255453 - 1255575
Alignment:
Q  10 tgacacttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattgtttt--ctttgattcgacatttctaggaccggtgtccgacaccta 107  Q
    ||||||| || ||| ||||||  || |||||||||||| ||| |||||||| || ||||  |||| |||||||| | |||| ||  || || ||||||||    
T  1255453 tgacactcgtatgacacgtgtcagacaactaaaatcggcgtcttaaataaagttattttttctttaattcgacactcctagaactagtatctgacaccta 1255552  T
Q  108 tataacactcatacgagccgtgt 130  Q
    |||||||| ||||||||| ||||    
T  1255553 tataacacgcatacgagctgtgt 1255575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 14998569 - 14998622
Alignment:
Q  95 tgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaat 148  Q
    |||| |||||||||| ||||||||||||||  ||||||||||||| | ||||||    
T  14998569 tgtctgacacctatacaacactcatacgaggggtgtcagacaacttagacaaat 14998622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 309
Target Start/End: Complemental strand, 19294497 - 19294452
Alignment:
Q  264 tttttaacttttttgataggagttgaataaataaaggtcaaatact 309  Q
    |||||| ||||||| |||| || |||||||||||||||||||||||    
T  19294497 tttttagcttttttcatagtagatgaataaataaaggtcaaatact 19294452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 17733148 - 17732843
Alignment:
Q  7 ctatgacacttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaat--tgttttctttgattcgacatttctaggaccggtgtccgacac 104  Q
    |||||| ||||||  || ||||||  || ||||||||||||||||  |||||||||  | |||||||| |||||||| | |||||||||||||| |||||    
T  17733148 ctatgaaacttgttcgacacgtgtcagacaactaaaatcggtgtctcaaataaaatatttttttctttaattcgacactcctaggaccggtgtc-gacac 17733050  T
Q  105 ctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnn--ctctcttactttcatgtaccgtagatacaagagttac 202  Q
    || ||||||| |||||||||||||||| ||||||||  |||||||| | ||| |         ||||||| ||| ||  || ||||||||||||||||||    
T  17733049 ctctataacattcatacgagccgtgtcggacaactctgacaaatatatgaaacatttttttttctctcttgcttccacatatcgtagatacaagagttac 17732950  T
Q  203 atatgttttgaaaaatgttgatcaattag-aggtaatatatacattacagctgattataacatttttaacttttttgataggagttgaataaat-aaagg 300  Q
    || |||||||| |||||||||| |||||| |||||||| |  |||||||| ||||||||||||||||| |||||||||||| || ||||||||| |||||    
T  17732949 atgtgttttgagaaatgttgattaattaggaggtaataga--cattacagttgattataacatttttagcttttttgatagtagatgaataaataaaagg 17732852  T
Q  301 tcaaatact 309  Q
    |||||||||    
T  17732851 tcaaatact 17732843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 65 - 309
Target Start/End: Original strand, 40289003 - 40289244
Alignment:
Q  65 ttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnn 164  Q
    ||||||||  ||||||| | ||| || ||||||||||||||||||||||||||||||||| | |||| ||||||||| |||||||||||||| |          
T  40289003 ttttctttacttcgacactcctacgatcggtgtccgacacctatataacactcatacgagtcatgtcggacaactcaaacaaatatctaaaaca-ttttt 40289101  T
Q  165 nctctcttactttcatgtaccgtagatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacat 264  Q
     ||||||| ||| ||   ||| ||||||||||| ||||||||||||||| ||||||| ||||||||| |||  | || ||||||||  ||||||    ||    
T  40289102 tctctcttgcttccacacaccatagatacaagatttacatatgttttgagaaatgttaatcaattaggggt--tgtagacattacaattgattaagttat 40289199  T
Q  265 ttttaacttttttgataggagttgaataaataaaggtcaaatact 309  Q
    |||||  ||||||||||| || |||||||||||||||||||||||    
T  40289200 ttttagtttttttgatagtagatgaataaataaaggtcaaatact 40289244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 95 - 307
Target Start/End: Original strand, 45612316 - 45612530
Alignment:
Q  95 tgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnn---ctctcttactttcatgtaccgtagat 191  Q
    |||||||||||| ||||||||||||||||| |||||| ||||||||| |||||||||||||| |          ||||||| ||| |    ||| |||||    
T  45612316 tgtccgacacctgtataacactcatacgagtcgtgtcggacaactcaaacaaatatctaaaacaatttttttttctctcttgcttccgcacaccatagat 45612415  T
Q  192 acaagagttacatatgtttt-gaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgataggagttgaa 290  Q
    |||||||||||||||||||| || |||||||||| ||| || | |  |||| |||||| || |||||||| |||||||| |||||||||||| || ||||    
T  45612416 acaagagttacatatgtttttgagaaatgttgattaataagggtt--tatagacattatagttgattatatcatttttagcttttttgatagtagatgaa 45612513  T
Q  291 taaataaaggtcaaata 307  Q
    |||||||||||||||||    
T  45612514 taaataaaggtcaaata 45612530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 300
Target Start/End: Complemental strand, 31734688 - 31734573
Alignment:
Q  182 taccgtagatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgata 281  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  | | ||||  ||| |||||| || ||||||||||||||||| || ||||||||    
T  31734688 taccgtagatacaagagttacatatgttttgagaaatgttgatcacat-ggggta--atagacattatagttgattataacatttttagctcttttgata 31734592  T
Q  282 ggagttgaataaataaagg 300  Q
    | || ||||||||||||||    
T  31734591 gtagatgaataaataaagg 31734573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 54305905 - 54305841
Alignment:
Q  92 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaa 156  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  54305905 cggtgtccaacacctatacaacactcatacgagccgtgtcagacaactcacacaaatatctaaaa 54305841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 658258 - 658401
Alignment:
Q  1 acacttctatgacacttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattgtttt----ctttgattcgacatttctaggaccggtg 96  Q
    |||||||||||||||||||  || |||||| ||||||| || | | ||||||||||||||||||||||    ||||  ||||||| | |||| || ||||    
T  658258 acacttctatgacacttgtacgacacgtgtcggataaccaagaccagtgtcctaaataaaattgttttttttctttacttcgacactcctagaac-ggtg 658356  T
Q  97 tccgacacctatataacactcatacgagccgtgtcagacaactca 141  Q
    ||||||||||||| |||||||| ||||||||| ||  ||||||||    
T  658357 tccgacacctatacaacactcaaacgagccgtttcgaacaactca 658401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 3420046 - 3419998
Alignment:
Q  183 accgtagatacaagagttacatatgttttgaaaaatgttgatcaattag 231  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3420046 accgtagatacaagagttacatatgttttgagaaatgttgatcaattag 3419998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 18198688 - 18198737
Alignment:
Q  90 accggtgtccgacacctatataacactcatacgagccgtgtcagacaact 139  Q
    ||||||||||||||||||||||||||||||||||| | | ||||||||||    
T  18198688 accggtgtccgacacctatataacactcatacgagacatatcagacaact 18198737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 658446 - 658537
Alignment:
Q  183 accgtagatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaactttt 275  Q
    |||||||| |||||||||||||||||  ||||||||||||| |||||| ||||  |||| | |||  || |||||| ||||||||||||||||    
T  658446 accgtagaaacaagagttacatatgtgctgaaaaatgttgaacaattaaaggt-ttatagaaatttaagttgattacaacatttttaactttt 658537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 55680993 - 55680921
Alignment:
Q  65 ttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaa 137  Q
    ||||||||  ||||||| | ||| || ||||||||||||||||| |||||||||||||||| |||||| ||||    
T  55680993 ttttctttacttcgacactcctacgatcggtgtccgacacctatgtaacactcatacgagctgtgtcaaacaa 55680921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 29987982 - 29987892
Alignment:
Q  65 ttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaa 156  Q
    ||||||||  ||||||| | ||| || ||||||| ||| ||| |||||||||||||||||  ||||  ||||||||| ||||||||||||||    
T  29987982 ttttctttacttcgacactcctacgatcggtgtctgac-cctgtataacactcatacgagatgtgttggacaactcaaacaaatatctaaaa 29987892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 44507962 - 44507913
Alignment:
Q  90 accggtgtccgacacctatataacactcatacgagccgtgtcagacaact 139  Q
    |||| |||| ||||| ||||||||||||||||||| |||||| |||||||    
T  44507962 accgatgtctgacacatatataacactcatacgagacgtgtcggacaact 44507913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 277
Target Start/End: Original strand, 18602871 - 18603130
Alignment:
Q  17 tgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattgtttt---ctttgattcgacatttctaggaccggtgtccgacacctatataac 113  Q
    ||||||| |||||| ||| |||||||||||||||||||||||||||||||||   ||||||||||||| | ||| ||||||||||||||||||||| |||    
T  18602871 tgtctgacacgtgtcggacaactaaaatcggtgtcctaaataaaattgtttttttctttgattcgacactcctaagaccggtgtccgacacctataaaac 18602970  T
Q  114 actcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgta-gatacaagagttacatatgttttg 212  Q
      |||| ||| | || || ||||||||| |||||||||||||  |       ||||||| ||| ||  ||| ||| ||||||||||||||||||||||||    
T  18602971 --tcat-cgaactgtttcggacaactcagacaaatatctaaagcatttttttctctcttgcttccacatacggtatgatacaagagttacatatgttttg 18603067  T
Q  213 aaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaactttttt 277  Q
    | ||||||||||||||||| ||| | ||  ||||||||  ||||||||||||||||| |||||||    
T  18603068 agaaatgttgatcaattag-ggtga-attgacattacaattgattataacatttttagctttttt 18603130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 36 - 227
Target Start/End: Original strand, 15850283 - 15850478
Alignment:
Q  36 aactaaaatcggtgtcctaaataaaattg--ttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagcc--gtgtc 131  Q
    |||||||||||||||||||||||||||||  |||||||| |||| ||| |  || |||||||||| ||||||||||||||||| ||| |||||  |||||    
T  15850283 aactaaaatcggtgtcctaaataaaattgttttttctttaattcaacactcttaagaccggtgtctgacacctatataacacttataagagccgtgtgtc 15850382  T
Q  132 agacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagatacaagagttacatatgttttgaaaaatgttgatcaa 227  Q
     ||||||| | || ||||||| |||||       ||||||| ||| ||  | ||||||||||||||||||||||||||||||||||||||||||||    
T  15850383 ggacaactaagacgaatatctgaaatatttttttctctcttgcttccacattccgtagatacaagagttacatatgttttgaaaaatgttgatcaa 15850478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 65 - 306
Target Start/End: Complemental strand, 28421354 - 28421114
Alignment:
Q  65 ttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaata--nnnn 162  Q
    ||||||||  ||||||||| ||| || |||||||||||||||||||||||||||||||||| ||||| ||    ||| || ||||||||||| |          
T  28421354 ttttctttacttcgacattcctacgatcggtgtccgacacctatataacactcatacgagctgtgtcgga-gtttcagactaatatctaaaacaattttt 28421256  T
Q  163 nnnctctcttactttcatgtaccgtagatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataac 262  Q
       ||||||  ||| |    ||| |||||||||||||||||||| |||||| |||| |||||||||||| |||  |||| |||||| || |||||||| |    
T  28421255 tttctctctcgcttccgcacaccatagatacaagagttacatatattttgagaaatcttgatcaattagtggt--tatagacattatagttgattatatc 28421158  T
Q  263 atttttaacttttttgataggagttgaataaataaaggtcaaat 306  Q
     |||||| |||||||||||| || ||||||||||||||||||||    
T  28421157 gtttttagcttttttgatagtagatgaataaataaaggtcaaat 28421114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 309
Target Start/End: Original strand, 15131815 - 15132060
Alignment:
Q  65 ttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatcta---aaatannn 161  Q
    ||||||||  ||||||| | ||| |||||||||||||||||||||||||||||||| |||| |||||  |||||||| |||||||||||   || |        
T  15131815 ttttctttacttcgacactcctacgaccggtgtccgacacctatataacactcatatgagcagtgtcgaacaactcagacaaatatctaaacaatttttt 15131914  T
Q  162 nnnnctctcttactttcatgtaccgtagatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataa 261  Q
        ||||||| |||      |||  ||||||| |||||||||||||||| | |||| |||||||||||| |||  |||| |||||| || ||||||||     
T  15131915 ttttctctcttgcttctgcacaccagagatacaggagttacatatgtttttagaaatattgatcaattaggggt--tatagacattatagttgattatat 15132012  T
Q  262 catttttaacttttttgataggagttgaataaataaaggtcaaatact 309  Q
    |||||||| |||||| ||||| || | ||||||||||| |||||||||    
T  15132013 catttttagctttttcgatagtagataaataaataaagatcaaatact 15132060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 199 - 307
Target Start/End: Complemental strand, 44502469 - 44502363
Alignment:
Q  199 ttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgataggagttgaataaataaa 298  Q
    ||||||||||||||| ||||||||||  ||||| |||  |||| |||||| || ||||||||  |||||||||||||||||||| || ||||||||||||    
T  44502469 ttacatatgttttgagaaatgttgattgattaggggt--tatagacattatagttgattatattatttttaacttttttgatagcagatgaataaataaa 44502372  T
Q  299 ggtcaaata 307  Q
    |||||||||    
T  44502371 ggtcaaata 44502363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 1226248 - 1226126
Alignment:
Q  185 cgtagatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgatagga 284  Q
    ||||||||||||||||| |||||| |||| ||||||| |||||||||||||  |||| | |||| || |||||| |||||||||||  |||||||||| |    
T  1226248 cgtagatacaagagttaaatatgtgttgagaaatgttaatcaattagaggt-ttatagaaattaaagttgattacaacatttttaa-atttttgatagta 1226151  T
Q  285 gttgaataaataaaggtcaaatact 309  Q
    | ||||||||||||| |||||||||    
T  1226150 gatgaataaataaagatcaaatact 1226126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 31772740 - 31772664
Alignment:
Q  65 ttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactca 141  Q
    ||||||||  ||||||| |||| |||||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  31772740 ttttctttacttcgacagttcttggaccggtgtccgatacctatataacactcatacgagacgtgtcggacaactca 31772664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 15850496 - 15850549
Alignment:
Q  257 tataacatttttaacttttttgataggagttgaataaataaaggtcaaatactg 310  Q
    ||||||||||||| |||||||||||| || |||||||||||| |||||||||||    
T  15850496 tataacatttttagcttttttgatagtagatgaataaataaatgtcaaatactg 15850549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 309
Target Start/End: Original strand, 18393572 - 18393643
Alignment:
Q  238 tatatacattacagctgattataacatttttaacttttttgataggagttgaataaataaaggtcaaatact 309  Q
    |||| |||||| || |||||| ||| ||||||| ||||||||||| || || ||||||||||||||||||||    
T  18393572 tatagacattaaagttgattacaacgtttttaaattttttgatagtagatggataaataaaggtcaaatact 18393643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 37855276 - 37855230
Alignment:
Q  263 atttttaacttttttgataggagttgaataaataaaggtcaaatact 309  Q
    ||||||||| |||||||||| || ||||||||||||||| |||||||    
T  37855276 atttttaacctttttgatagtagatgaataaataaaggttaaatact 37855230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 18393439 - 18393479
Alignment:
Q  91 ccggtgtccgacacctatataacactcatacgagccgtgtc 131  Q
    ||||||||| |||||||||||||||||||| ||| ||||||    
T  18393439 ccggtgtccaacacctatataacactcatatgagacgtgtc 18393479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 92 - 309
Target Start/End: Complemental strand, 26576349 - 26576131
Alignment:
Q  92 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnn---ctctcttactttcatgtaccgta 188  Q
    |||| ||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |          ||||||| ||| |    ||| ||    
T  26576349 cggtctccaacacctatataacactcatacgagccgtgtcggacaactcaaacaaatatttaaaacaaattttttctctctcttgcttccgcacaccata 26576250  T
Q  189 gatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgataggagttg 288  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| |||  |||| |||||| || |||||||| | |||||| ||| |||||||| || ||    
T  26576249 gatacaagagttacatatgttttgagaaatgttgatcgattagtggt--tatagacattatagttgattatatcgtttttagcttatttgatagtagatg 26576152  T
Q  289 aataaataaaggtcaaatact 309  Q
    |||||||||||||||||||||    
T  26576151 aataaataaaggtcaaatact 26576131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 92 - 309
Target Start/End: Original strand, 34409458 - 34409674
Alignment:
Q  92 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagat 191  Q
    |||||||||||||||||||||||||||||||||  ||||   |||||||| |||| ||||||||| |       |||||||  || |    ||| |||||    
T  34409458 cggtgtccgacacctatataacactcatacgagttgtgttgaacaactcaaacaactatctaaaacaattttctctctcttgattccgcacaccatagat 34409557  T
Q  192 acaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttt-tgataggagttgaa 290  Q
    |||||||||||||||||||||| ||||||||||||||||| |||  |||| |||||| || |||||||| |||||||| |||||| |||  | || | ||    
T  34409558 acaagagttacatatgttttgagaaatgttgatcaattaggggt--tatagacattatagttgattatatcatttttagctttttctgacggtagataaa 34409655  T
Q  291 taaataaaggtcaaatact 309  Q
    |||||||||||||||||||    
T  34409656 taaataaaggtcaaatact 34409674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 194 - 306
Target Start/End: Original strand, 44649945 - 44650056
Alignment:
Q  194 aagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgataggagttgaataa 293  Q
    |||||||| |||||| |||||||||||||||||||||| ||   |||| | |||| || |||||| ||||||||||||||||||||||| || |||||||    
T  44649945 aagagttatatatgtgttgaaaaatgttgatcaattaggggct-tatagaaattaaagttgattacaacatttttaacttttttgatagtagatgaataa 44650043  T
Q  294 ataaaggtcaaat 306  Q
    |||||||||||||    
T  44650044 ataaaggtcaaat 44650056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 251
Target Start/End: Complemental strand, 9929938 - 9929777
Alignment:
Q  92 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaata----nnnnnnnctctcttactttcatgtaccgt 187  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||  ||||||||||||||||           || |||| ||| ||   ||| |    
T  9929938 cggtgtccgacacctatataacactcataccagccgtgtcaaacaactctgacaaatatctaaaataagtttttttttctatcttgcttccacacaccat 9929839  T
Q  188 agatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacag 251  Q
    |||||||||||||||||||||||||| ||||||||||||| ||| |||  |||| |||||||||    
T  9929838 agatacaagagttacatatgttttgagaaatgttgatcaaataggggt--tatagacattacag 9929777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 309
Target Start/End: Complemental strand, 27004228 - 27004105
Alignment:
Q  187 tagatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacattttta---acttttttgatagg 283  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| |||  ||| ||||||| || |||||||| ||||||||     |||||| | ||     
T  27004228 tagatacaagagttgtatatgttttgaaaaatgttgatcaattaggggt--tatgtacattatagttgattatatcatttttagtttttttttttacagt 27004131  T
Q  284 agttgaataaataaaggtcaaatact 309  Q
    || |||||||||||||||||||||||    
T  27004130 agatgaataaataaaggtcaaatact 27004105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 32200690 - 32200781
Alignment:
Q  65 ttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaa 156  Q
    ||||||||  ||||||| | ||| || ||||| || |||||||||||||| |||||||||||||||| ||||||||| | ||||||||||||    
T  32200690 ttttctttacttcgacactcctacgatcggtgcccaacacctatataacagtcatacgagccgtgtcggacaactcagaaaaatatctaaaa 32200781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 309
Target Start/End: Original strand, 4747960 - 4748172
Alignment:
Q  95 tgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagataca 194  Q
    |||||||||||||||||||||||||||||||| | || ||||||| | |||||| ||| |||         | || || ||| ||   ||||||||| ||    
T  4747960 tgtccgacacctatataacactcatacgagccatctcggacaactgagacaaatgtctgaaacttttttttcactattgcttccacacaccgtagatcca 4748059  T
Q  195 agagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgataggagttgaataaa 294  Q
    |||||||||| |||| |||||  ||||||||| | || ||| ||| | |||||| || |||||| | ||||||||  || ||  |||| || ||||||||    
T  4748060 agagttacatgtgttgtgaaa--tgttgatcactgaggggttatagagacattaaagttgattacagcatttttagtttgttcaatagaagatgaataaa 4748157  T
Q  295 taaaggtcaaatact 309  Q
    |||||||||||||||    
T  4748158 taaaggtcaaatact 4748172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 13039164 - 13039025
Alignment:
Q  93 ggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnc-tctcttactttcatgtaccgtagat 191  Q
    |||||||||||| | ||||||||||||| |||  |||||||||| |||| |||||||||||||| |         |||||| ||| |    ||| |||||    
T  13039164 ggtgtccgacacatttataacactcatatgagttgtgtcagacagctcagacaaatatctaaaacaatttttttatctcttgcttccgcacaccatagat 13039065  T
Q  192 acaagagttacatatgttttgaaaaatgttgatcaattag 231  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  13039064 acaagagttacatatgttatgagaaatgttgatcaattag 13039025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 41849301 - 41849228
Alignment:
Q  75 ttcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaat 148  Q
    ||||||| | || |||| |||||||||||||||||||||||| ||| ||| |||||| ||||||||| ||||||    
T  41849301 ttcgacactccttggactggtgtccgacacctatataacacttatatgaggcgtgtcggacaactcaaacaaat 41849228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 17651540 - 17651476
Alignment:
Q  89 gaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatcta 153  Q
    |||||||||||||||| ||||||||||| ||| ||| |||||| ||||||| | |||||||||||    
T  17651540 gaccggtgtccgacacttatataacacttatatgaggcgtgtcggacaacttagacaaatatcta 17651476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 9929767 - 9929701
Alignment:
Q  243 acattacagctgattataacatttttaacttttttgataggagttgaataaataaaggtcaaatact 309  Q
    ||||||||| |||| ||| |||||| | | |||||||||| || |||||||||||||||||||||||    
T  9929767 acattacagttgatcatatcattttgagcatttttgatagtagatgaataaataaaggtcaaatact 9929701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 32200816 - 32200857
Alignment:
Q  189 gatacaagagttacatatgttttgaaaaatgttgatcaatta 230  Q
    ||||||||||||||||||||||||| ||||| ||||||||||    
T  32200816 gatacaagagttacatatgttttgagaaatgctgatcaatta 32200857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 32200870 - 32200915
Alignment:
Q  264 tttttaacttttttgataggagttgaataaataaaggtcaaatact 309  Q
    |||||| |||||||||||| || |||||||||||||||||||||||    
T  32200870 tttttagcttttttgatagtagatgaataaataaaggtcaaatact 32200915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 18724618 - 18724681
Alignment:
Q  89 gaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatct 152  Q
    |||| ||||| |||||||||||| |||| | | ||| |||||||||||||||| ||||||||||    
T  18724618 gaccagtgtctgacacctatatatcacttaaaagaggcgtgtcagacaactcagacaaatatct 18724681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 309
Target Start/End: Complemental strand, 13037423 - 13037378
Alignment:
Q  264 tttttaacttttttgataggagttgaataaataaaggtcaaatact 309  Q
    ||||||| ||||||||||| || ||||||||||||| |||||||||    
T  13037423 tttttaatttttttgatagtagatgaataaataaagatcaaatact 13037378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 15989943 - 15990003
Alignment:
Q  92 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatct 152  Q
    ||||||| ||||| ||||||||| |||||||||||||||   |||||||| ||| ||||||    
T  15989943 cggtgtctgacacttatataacagtcatacgagccgtgttgaacaactcagacatatatct 15990003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 15990038 - 15990082
Alignment:
Q  185 cgtagatacaagagttacatatgttttgaaaaatgttgatcaatt 229  Q
    |||||||| ||||||||||||||| |||| ||||||||| |||||    
T  15990038 cgtagatataagagttacatatgtgttgagaaatgttgaccaatt 15990082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 48632377 - 48632675
Alignment:
Q  9 atgacacttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattgtttt---ctttgattcgacatttctaggaccggtgtccgacacc 105  Q
    |||||||| || ||| ||| || ||| |||||| | ||||||||||||||||||||||||   ||||| ||||||| | |||| ||||||||||||||||    
T  48632377 atgacactcgtatgacacgcgtcggacaactaagaccggtgtcctaaataaaattgtttttttctttgcttcgacactcctag-accggtgtccgacacc 48632475  T
Q  106 tatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagatacaagagttacata 205  Q
    ||||  ||||||| ||||||| |||||||||||||| |||||| ||| ||| |        ||||||  ||  |   |||||||||||||||||| ||||    
T  48632476 tata--acactcacacgagccatgtcagacaactcaaacaaatgtctgaaacattttttt-tctcttggttctacacaccgtagatacaagagttgcata 48632572  T
Q  206 tgttttgaaaaatgttgatcaatta-gaggtaatatatacattacagctgattataacatttttaacttttttgataggagttgaataaataaaggtcaa 304  Q
    ||| |||| |||||||||||||||| | |||  |||| | |||| || |||||| ||| |||||| |||||||||||| ||  |||||||||||||||||    
T  48632573 tgtgttgagaaatgttgatcaattacggggt--tatagaaattaaagttgattacaacgtttttagcttttttgatagtagaagaataaataaaggtcaa 48632670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 75 - 309
Target Start/End: Complemental strand, 32741149 - 32740919
Alignment:
Q  75 ttcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnn-ctctctta 173  Q
    ||||||| | ||| || ||||||||||||| ||||||||||| || |||||||||||| ||||||||  ||||||||||||| |        |||||||     
T  32741149 ttcgacactcctacgatcggtgtccgacac-tatataacacttatgcgagccgtgtcaaacaactcaggcaaatatctaaaacaatttttttctctcttg 32741051  T
Q  174 ctttcatgtaccgtagatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaactt 273  Q
    ||| ||   ||| ||||||||||||||||||||||||||  ||||||||||||||| | |||  |||| ||||||||  |||||||  |||||||| |||    
T  32741050 cttccacacaccatagatacaagagttacatatgttttgtgaaatgttgatcaattgggggt--tatagacattacaattgattat--catttttagctt 32740955  T
Q  274 ttttgataggagttgaataaataaaggtcaaatact 309  Q
    ||||||| | || |||||||||||||||||||||||    
T  32740954 ttttgatggtagatgaataaataaaggtcaaatact 32740919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 68 - 309
Target Start/End: Complemental strand, 23432180 - 23431937
Alignment:
Q  68 tctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnct 167  Q
    ||||| ||||| || | |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||| || |        |    
T  23432180 tctttaattcggcactcctaggaccggtgtccgacacttatataacactcatacgagccgtgtcggacaactcagataaatatctagaacattttt---t 23432084  T
Q  168 ctcttactttcatgtaccgtagatacaagagttacatatgttttgaaaaatgttgatcaatta-gaggtaat-----atatacattacagctgattataa 261  Q
    |||| | || ||  ||| | |||||||||||||||||||||||||| || || ||| |||||| | ||||||     ||| ||||||| |  ||||||||    
T  23432083 ctctcatttccacatacagaagatacaagagttacatatgttttgagaagtg-tgaacaattagggggtaatagacaatagacattaccgtagattataa 23431985  T
Q  262 catttttaacttttttgataggagttgaataaataaaggtcaaatact 309  Q
    ||||||||||||||||||||| || ||||||||| || ||||||||||    
T  23431984 catttttaacttttttgatagtagatgaataaatgaatgtcaaatact 23431937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 195 - 308
Target Start/End: Complemental strand, 126435 - 126323
Alignment:
Q  195 agagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgataggagttgaataaa 294  Q
    ||||||||||||||||||| ||||||||||||||||| ||   |||| |||||| || |||||||||||||||||||| |||| |||| || ||||||||    
T  126435 agagttacatatgttttgagaaatgttgatcaattaggggggttatagacattaaagttgattataacatttttaact-ttttaatagtagatgaataaa 126337  T
Q  295 taaaggtcaaatac 308  Q
    ||||||||||||||    
T  126336 taaaggtcaaatac 126323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 18488551 - 18488357
Alignment:
Q  36 aactaaaatcggtgtcctaaataaaat-tgttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcaga 134  Q
    |||||| ||||||||   ||||||||| | |||||||| |||||||| | |||||||||||||| ||||||||||||||| ||||||||||| |||| ||    
T  18488551 aactaacatcggtgtatcaaataaaatattttttctttaattcgacactcctaggaccggtgtc-gacacctatataacattcatacgagccatgtcgga 18488453  T
Q  135 caactcatacaaatatctaaaata-nnnnnnnctctcttactttcatgtaccgtagatacaagagttacatatgttttgaaaaatgttgatcaatt 229  Q
    ||||||  |||||||| | ||| |        ||||||| ||| ||  || ||||||| |||||||||||| |||||||| |||||||||| ||||    
T  18488452 caactctgacaaatatatgaaacattttttttctctcttgcttccacatatcgtagatccaagagttacatgtgttttgagaaatgttgattaatt 18488357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 309
Target Start/End: Original strand, 9148970 - 9149090
Alignment:
Q  186 gtagatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatatatacattacagctgattataacatttttaacttttttgataggag 285  Q
    ||||||||||||||||| |||| ||  | |||||| |||||||| | |||  |||| |||||| || ||  ||||||||||||| |||||||||||| ||    
T  9148970 gtagatacaagagttacgtatgatta-agaaatgtagatcaattggtggt--tatagacattaaagttggctataacatttttagcttttttgatagtag 9149066  T
Q  286 ttgaataaataaaggtcaaatact 309  Q
     | ||||||||||||| |||||||    
T  9149067 ataaataaataaaggtaaaatact 9149090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 309
Target Start/End: Complemental strand, 3387796 - 3387725
Alignment:
Q  238 tatatacattacagctgattataacatttttaacttttttgataggagttgaataaataaaggtcaaatact 309  Q
    |||| |||||| || |||||| ||| ||||||| ||||| ||| | || |||||||||||||||||||||||    
T  3387796 tatagacattaaagttgattacaacgtttttaaatttttcgatggtagatgaataaataaaggtcaaatact 3387725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 306
Target Start/End: Original strand, 7021538 - 7021661
Alignment:
Q  185 cgtagatacaagagttacatatgttttgaaaaatgttgatcaattag-aggtaatatatacattacagctgattataacatttttaac-ttttttgatag 282  Q
    |||||||| ||||||||||||||| |||| |||||||||| ||||||  ||| ||| | |   || || |||||| |||||||||  | |||||||||||    
T  7021538 cgtagatataagagttacatatgtgttgagaaatgttgataaattagcgggttatagaaattataaagttgattacaacatttttggctttttttgatag 7021637  T
Q  283 gagttgaataaataaaggtcaaat 306  Q
     || | ||||||||||||||||||    
T  7021638 tagataaataaataaaggtcaaat 7021661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 3387928 - 3387883
Alignment:
Q  92 cggtgtccgacacctatataacactcatacgagccgtgtcagacaa 137  Q
    |||||||| |||||||||||||||||||| ||| |||||| |||||    
T  3387928 cggtgtccaacacctatataacactcatatgagacgtgtccgacaa 3387883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 18476633 - 18476576
Alignment:
Q  253 tgattataacatttttaacttttttgataggagttgaataaat-aaaggtcaaatact 309  Q
    |||||| || ||||||| |||||||||||| || ||||||||| ||||||||||||||    
T  18476633 tgattacaatatttttagcttttttgatagtagatgaataaataaaaggtcaaatact 18476576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 126508 - 126456
Alignment:
Q  100 gacacctatataacactcatacgagccgtgtcagacaactcatacaaatatct 152  Q
    |||||| ||||||||||||||||||||||||  |||| || | ||||||||||    
T  126508 gacacccatataacactcatacgagccgtgttggacagcttagacaaatatct 126456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 3955218 - 3955178
Alignment:
Q  101 acacctatataacactcatacgagccgtgtcagacaactca 141  Q
    |||| ||||||||||||||||||| ||||||| ||||||||    
T  3955218 acacttatataacactcatacgaggcgtgtcaaacaactca 3955178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 70040 - 70089
Alignment:
Q  185 cgtagatacaagagttacatatgttttgaaaaatgttgatcaattagagg 234  Q
    ||||||||||||| |||||||||| |||| ||||||||||||||||||||    
T  70040 cgtagatacaagaattacatatgtgttgagaaatgttgatcaattagagg 70089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 289109 - 289060
Alignment:
Q  90 accggtgtccgacacctatataacactcatacgagccgtgtcagacaact 139  Q
    ||||||||||||||||||||||||||||||||||| | | ||||||||||    
T  289109 accggtgtccgacacctatataacactcatacgagacatatcagacaact 289060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 309
Target Start/End: Complemental strand, 13051 - 12948
Alignment:
Q  205 atgttttgaaaaatgttgatcaattag-aggtaatatatacattacagctgattataacatttttaacttttttgataggagttgaataaataaaggtca 303  Q
    |||| |||| ||| ||||||||||||| ||||  |||| | |||| || |||||| ||  |||||| |||||||||||| || |||||||||||| ||||    
T  13051 atgtgttgagaaacgttgatcaattaggaggt--tatagaaattaaagttgattacaatgtttttagcttttttgatagtagatgaataaataaatgtca 12954  T
Q  304 aatact 309  Q
    ||||||    
T  12953 aatact 12948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University