View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_39 (Length: 318)
Name: NF10103_low_39
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 11349990 - 11350285
Alignment:
| Q |
1 |
aaaaatgttcgaaaaataatcactaaatgcatgttagaagaataattaacaatcaattcacatgcagcaactacaccttatagaaggattacaaaaataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11349990 |
aaaaatgttcgaaaaataatcactaaatgcatgttagaagaataattaacaatcaattcacatgcagcaactacaccttatagaaggattacaaaaataa |
11350089 |
T |
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| Q |
101 |
gagacaaaggaattagtgaaataagtgtgaaattttttgaagtaagagcaaatccatacaatcttttttggtgataccttctttgttgctgtcatggctt |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11350090 |
gagacaaaggaattagtgaaataagtgtgaaaaaatttg----aagagcaaatccatacaatcttttttggtgataccttctttgtcgctgtcatggctt |
11350185 |
T |
|
| Q |
201 |
gttcatacgttgatgccactatgggccgccgctccattccgtcgttgactttgccggtggcgaggaaactatcatcaccttcccctttctcatatctttt |
300 |
Q |
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| T |
11350186 |
gtgcatacg-tgatgctagtatgggctgccgctccattccgtcgttgactttgccggtggcgaggaaactgtcatcaccttcccctttatcatatctttt |
11350284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 300
Target Start/End: Complemental strand, 31873776 - 31873484
Alignment:
| Q |
6 |
tgttcgaaaaataatcactaaatgcatgttagaagaataattaacaatcaattcacatgcagcaactacaccttatagaaggattacaaaaataagagac |
105 |
Q |
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|||| ||| ||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31873776 |
tgttagaagaataatcactaaatgcatggtagaagaataatcaacagtcaattcacatgcagcaactacaccttatagaaggaacacaaaaataagagac |
31873677 |
T |
|
| Q |
106 |
aaaggaattagtgaaataagtgtgaaattttttgaagtaagagcaaatccatacaatcttttttggtgataccttctttgttgctgtcatggcttgttca |
205 |
Q |
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| T |
31873676 |
aaacgaattagtgaaataagtgtgaaaaaatttgaagtaagagcaaatccatacaatcatttttggtgataccttctatgtcgctgtcatggcttgtcca |
31873577 |
T |
|
| Q |
206 |
tacgttgatgccactatgggccgccgctccattccgtcgttgactttgccggtggcgaggaaactatcatcaccttcccctttctcatatctttt |
300 |
Q |
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||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| |
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| T |
31873576 |
tacattgacgccactaagggctgccgctccattccgtcgttgactttgccggtggtgaggaaactgtcatcacctt--cctttctcatatctttt |
31873484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 7458493 - 7458726
Alignment:
| Q |
1 |
aaaaatgttcgaaaaataatcactaaatgcatgttagaagaataattaacaatcaattcacatgcagcaactacaccttatagaaggattacaaaaataa |
100 |
Q |
| |
|
|||| |||| ||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| | |||||||||| |
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| T |
7458493 |
aaaattgttagaagaataatcactaaatgcatgttagaagaataatcaacaatcatttcacatgcagcaactacaccttatagaagaaacacaaaaataa |
7458592 |
T |
|
| Q |
101 |
gagacaaaggaattagtgaaataagtgtgaa-attttttgaagtaagagcaaatccatacaatcttttttggtgataccttctttgttgctgtcatggct |
199 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
7458593 |
gagacaaaggaattagtgaaataagtgtgaattttttttgaagtaagagcaaatccatacaatcttttttggtgataccttctctattgctgtcatggct |
7458692 |
T |
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| Q |
200 |
tgttcatacgttgatgccactatgggccgccgct |
233 |
Q |
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||| |||||||||||||||||| |||| |||||| |
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| T |
7458693 |
tgtgcatacgttgatgccactacgggctgccgct |
7458726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 18768263 - 18768148
Alignment:
| Q |
15 |
aataatcactaaatgcatgttagaagaataattaacaatcaattcacatg-cagcaactacaccttatagaaggattacaaaaataagagacaaaggaat |
113 |
Q |
| |
|
||||||||||| |||||||||| ||||||| ||| ||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18768263 |
aataatcactacatgcatgttataagaatatttaccaatcaatttacatgtcagcaactacaccttatagaaggaacacaaaaataagagacaaaggaat |
18768164 |
T |
|
| Q |
114 |
tagtgaaataagtgtg |
129 |
Q |
| |
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|||||||||||||||| |
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| T |
18768163 |
tagtgaaataagtgtg |
18768148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 228 - 301
Target Start/End: Original strand, 7462744 - 7462817
Alignment:
| Q |
228 |
gccgctccattccgtcgttgactttgccggtggcgaggaaactatcatcaccttcccctttctcatatcttttc |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
7462744 |
gccgctccattccgtcgttgactttgccggtggcgaggaaactgtcatcctcttcccctttctcatatcttttc |
7462817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 18768117 - 18768045
Alignment:
| Q |
228 |
gccgctccattccgtcgttgactttgccggtggcgaggaaactatcatcaccttcccctttctcatatctttt |
300 |
Q |
| |
|
||||||| ||||||||| |||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
18768117 |
gccgctctattccgtcgctgactttgcctgtggcgaggaaaatgtcatcaccttcccctttctcatatctttt |
18768045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 18782074 - 18782003
Alignment:
| Q |
15 |
aataatcactaaatgcatgttagaagaataattaacaatcaattcacatg-cagcaactacaccttatagaa |
85 |
Q |
| |
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||||||||||| |||||||| ||||||||||||| ||||||||||||||| ||||||||| ||||||||||| |
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| T |
18782074 |
aataatcactacatgcatgtaagaagaataattaccaatcaattcacatgtcagcaactataccttatagaa |
18782003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 301
Target Start/End: Complemental strand, 18790302 - 18790229
Alignment:
| Q |
228 |
gccgctccattccgtcgttgactttgccggtggcgaggaaactatcatcaccttcccctttctcatatcttttc |
301 |
Q |
| |
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||||||||||||||||| ||||||||| ||||| |||||| | ||||||||||||| |||||||| ||||||| |
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| T |
18790302 |
gccgctccattccgtcgctgactttgcttgtggcaaggaaaatgtcatcaccttcccatttctcatttcttttc |
18790229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 18509022 - 18509122
Alignment:
| Q |
30 |
catgttagaagaataattaacaatcaattcacatg-cagcaactacaccttatagaaggattacaaaaataagagacaaaggaattagtgaaataagtgt |
128 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18509022 |
catgctagaagaataattaccaatcaattcacatgtcggcaactacaccttaagaaaggaacacaaaaataagagacaaaggaattagtgaaataagtgt |
18509121 |
T |
|
| Q |
129 |
g |
129 |
Q |
| |
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| |
|
|
| T |
18509122 |
g |
18509122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 220 - 301
Target Start/End: Original strand, 18509145 - 18509226
Alignment:
| Q |
220 |
tatgggccgccgctccattccgtcgttgactttgccggtggcgaggaaactatcatcaccttcccctttctcatatcttttc |
301 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||| |||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
18509145 |
tatgggctgccgctccattccgtcgccgactttgcctgtggcgaggaaaatgtcatcaccttcccctttctcatatcttttc |
18509226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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