View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_4 (Length: 593)
Name: NF10103_low_4
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 5e-79; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 18105050 - 18105251
Alignment:
| Q |
19 |
cttgtgcctggacccgaatgttggaaagcaaaacaagggacaagattgcaagaatggttttagtaattctcaaagatggaagaatctccattttctccat |
118 |
Q |
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| T |
18105050 |
cttgtgcctggacccgaatgttggaaagcaaaacaagtgacaagattgcaagaacagttttagtaattctcaaagatgacagaatctccattttctccat |
18105149 |
T |
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| Q |
119 |
ctaagaaaactctagaagttgatagaaaaatgacaactgtattgtttgagattccttgaacccttgatgaatacagatattgatatatatagaccttcta |
218 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||||||| ||||||||||| ||||| |
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| T |
18105150 |
ctaagaaaactttggaagttgatagaaaaatgacaactgtattgtttgagatttcttcaactcttgataaatacagatattgctatatatagactttcta |
18105249 |
T |
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| Q |
219 |
ac |
220 |
Q |
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|| |
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| T |
18105250 |
ac |
18105251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 18066777 - 18066929
Alignment:
| Q |
19 |
cttgtgcctggacccgaatgttggaaagcaaaacaagggacaagattgcaagaatggttttagtaattctcaaagatggaagaatctccattttctccat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18066777 |
cttgtgcctggacccgaatgttggaaagcaaaacaagtgacaagattgcaagaacagttttagtaattctcaaagatgacagaatctccattttctccat |
18066876 |
T |
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| Q |
119 |
ctaagaaaactctagaagttgatagaaaaatgacaactgtattgtttgagatt |
171 |
Q |
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| T |
18066877 |
ctaagaaaactttggaagttgatagaaaaatgacaactgtattgtttgagatt |
18066929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 18130052 - 18130204
Alignment:
| Q |
19 |
cttgtgcctggacccgaatgttggaaagcaaaacaagggacaagattgcaagaatggttttagtaattctcaaagatggaagaatctccattttctccat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18130052 |
cttgtgcctggacccgaatgttggaaagcaaaacaagtgacaagattgcaagaacagttttagtaattctcaaagatgacagaatctccattttctccat |
18130151 |
T |
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| Q |
119 |
ctaagaaaactctagaagttgatagaaaaatgacaactgtattgtttgagatt |
171 |
Q |
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| T |
18130152 |
ctaagaaaactttggaagttgatagaaaaatgacaactgtattgtttgagatt |
18130204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 18111332 - 18111508
Alignment:
| Q |
30 |
acccgaatgttggaaagcaaaacaagggacaagattgcaagaatggttttagtaattctcaaagatggaagaatctccattttctccatctaagaaaact |
129 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
18111332 |
accccaatgttggaaagcaaaacaagtgacaagattgcaagaatggtttcagcaattctcaaagatgacagaatctccattttctccatctaagaaaact |
18111431 |
T |
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| Q |
130 |
ctagaagttgatagaaaaatgacaactgtattgtttgagattccttgaacccttgatgaatacagatattgatatat |
206 |
Q |
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| T |
18111432 |
cttgaagttgatagaaaaactacagctgtattgtttgaaattccttgaacccttgataaatactcatattgatatat |
18111508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 461 - 568
Target Start/End: Original strand, 18067184 - 18067291
Alignment:
| Q |
461 |
ttcttctttctatatattagaatttaaaattcaacatatattgattcaattgattagaaatttattcatacaacataatgacgtagttcacctcttttgc |
560 |
Q |
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| T |
18067184 |
ttcttctttctatatattagaatttaaaattcaacatatgttgattcaattgattaaaaatttattcatacaacataatgacgtagttcacctctcttgc |
18067283 |
T |
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| Q |
561 |
tttgtatt |
568 |
Q |
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|||||||| |
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| T |
18067284 |
tttgtatt |
18067291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 18067001 - 18067067
Alignment:
| Q |
244 |
aacaaagattaaattaagttgtgagaaattaattgaaaaaggagcacatgctagcgtccccataatt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
18067001 |
aacaaagattaaattaagttgtgagaaattaattgaaaaaggagcacatgctagcgaccacataatt |
18067067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 477 - 555
Target Start/End: Original strand, 18068442 - 18068520
Alignment:
| Q |
477 |
ttagaatttaaaattcaacatatattgattcaattgattagaaatttattcatacaacataatgacgtagttcacctct |
555 |
Q |
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| T |
18068442 |
ttagaatttataagtcaacatatattgattcaattgattagaaatttattcatacaatataatgatgtagttcaactct |
18068520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 18130276 - 18130342
Alignment:
| Q |
244 |
aacaaagattaaattaagttgtgagaaattaattgaaaaaggagcacatgctagcgtccccataatt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
18130276 |
aacaaagattaaattaagttgtgagaaattaattgaaaaaggagcacatgctagcgaccacataatt |
18130342 |
T |
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