View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_40 (Length: 313)
Name: NF10103_low_40
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 298
Target Start/End: Original strand, 11904467 - 11904751
Alignment:
| Q |
14 |
agacttcgccggtggctgttaatccaacagtatcaccgcatatttgacagatttgaccattcaaattctttaagggtttagactgcatagtgtataaatt |
113 |
Q |
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| T |
11904467 |
agacttcgccggtggctgttaatccaacagtatcaccgcatatttgacagatttgaccattcaaattctttaagggtttagactgcatagtgtataaatt |
11904566 |
T |
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| Q |
114 |
atacatgtcattgaaaattactactatacaagcacgatttaacctatctagatcaatttctcacaagttagataatagatatggtttttcaagatgtcaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11904567 |
atacatgtcattgaaaattactactatacaagcacgatttaaactatctagatcaatttctcacaagttagataatagatatggtttttcaagatgtcaa |
11904666 |
T |
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| Q |
214 |
ccaaaattagcaatgaaatgtatctggatctgagagtagttataaatcatatttcaaaccacaaactacaatcatagttctacct |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11904667 |
ccaaaattagcaatgaaatgtatctggatctgagagtagttataaatcatatttcaaaccacaaactacaatcatagttctacct |
11904751 |
T |
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