View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_5 (Length: 562)
Name: NF10103_low_5
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 22 - 562
Target Start/End: Complemental strand, 1886291 - 1885752
Alignment:
| Q |
22 |
gccaacacaaaagcttcttcttcatctctgatatagattcttatgcccactctatccagagcttcagacaggaagcgtcaacattacacttgtacctgcc |
121 |
Q |
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| T |
1886291 |
gccaacacaaaagcttcttcttcatctctgatatagattcttatgcccactctatccagagcttcagacaggaagcgtcaacattacacttgtacctgcc |
1886192 |
T |
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| Q |
122 |
tgagattgtttaacccatttctcaacgtgcctgaccgcatgagatacacttgatgtttgttttacctcctgagcattcttccaacttgaaaacaacatcg |
221 |
Q |
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| T |
1886191 |
tgagattgtttaacccatttctcaacgtgcctgaccgcatgagatacacttgatgtttgttttacctcctgagcattcttccaacttgaaaacaacatcg |
1886092 |
T |
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| Q |
222 |
tggctctatcacagataacctgacacttgtctgaggtatcattccatattatttctattttttcaaatgatccacatcagcgtgctaaagattggctgtt |
321 |
Q |
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| T |
1886091 |
tggctctatcacagataacctgacacttgtctgaggtatcattccatattatttctattttttcaaatgatccacatcagcgtgctaaagattggctgtt |
1885992 |
T |
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| Q |
322 |
gtgagggctctaaacgatgcagaattgcaaaaataatagaggagatatcacctggattcaaaatcgcaacagttatgtcttaacaaagacccagcagctg |
421 |
Q |
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| T |
1885991 |
gtgagggctctaaacgatgcagaattgcaaaaat-atagaggagatatcacctggattcaaaatcgcaacagttatgtcttaacaaagacccagcagctg |
1885893 |
T |
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| Q |
422 |
ccaacattgggcgattttgccacatagaaataaggtgtgcatgttgtcttcgtggtcattgtagaacggacactgttgggttcaattgactccgttagcc |
521 |
Q |
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| T |
1885892 |
ccaacattgggcgattttgccacatagaaataatgtgtgcatgttgtcttcgtggtcattatagaacggacactgttgggttcaattgactccgttagcc |
1885793 |
T |
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| Q |
522 |
tgcagtcgaaccctttgttgtaagcaattcgcgagtaactc |
562 |
Q |
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| T |
1885792 |
tgcagtcgaaccctttgttggaagaaattcgcgagtaactc |
1885752 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 319
Target Start/End: Complemental strand, 36256820 - 36256769
Alignment:
| Q |
268 |
tattatttctattttttcaaatgatccacatcagcgtgctaaagattggctg |
319 |
Q |
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| T |
36256820 |
tattatttctatttttccaaatgctcaacataagtgtgctaaagattggctg |
36256769 |
T |
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