View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_53 (Length: 266)
Name: NF10103_low_53
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 4924282 - 4924035
Alignment:
| Q |
18 |
gtatctctatattcatgtattatgattgtttgcatcgaccctttgcatttacataggagcattttctagtcaaatgttggtgcaaacagaattaagaaaa |
117 |
Q |
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| T |
4924282 |
gtatctctatattcatgtattatgattgtttgcatcgaccctttgcatttacataggagcattttctagtcaaatgttggtgcaaacagaattaagaaaa |
4924183 |
T |
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| Q |
118 |
tgcactaaatcatgcactaaaacccacaaacataacatgatnnnnnnntccaaagcagccttcattcata--------------------ccccacgatc |
197 |
Q |
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| T |
4924182 |
tgcactaaatcatgcactaaaacccacaaacataacatgataaaaaaatccaaagcagccttcattcataaaaagttaaaatgttactttccccacgatc |
4924083 |
T |
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| Q |
198 |
tgcttcctcctgcagtgccagagcatgctcaagttcaacctcaacctc |
245 |
Q |
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| T |
4924082 |
tgcttcctcctgcagtgccaaagcatgctcaagttcaacctcaacctc |
4924035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 4929424 - 4929370
Alignment:
| Q |
191 |
cacgatctgcttcctcctgcagtgccagagcatgctcaagttcaacctcaacctc |
245 |
Q |
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| T |
4929424 |
cacgctctgcttcctcctgcagtgctagagcatgctcaagttcaacctcaacctc |
4929370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 4903153 - 4903209
Alignment:
| Q |
189 |
cccacgatctgcttcctcctgcagtgccagagcatgctcaagttcaacctcaacctc |
245 |
Q |
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| T |
4903153 |
cccacaatctgcttcctcctgcagtgctagagcatgctcaagttcgacctcaacctc |
4903209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 5823104 - 5823044
Alignment:
| Q |
195 |
atctgcttcctcctgcagtgccagagcatgctcaagttcaacctcaacctcgccctttgct |
255 |
Q |
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| T |
5823104 |
atctgtttcctcctgcagtgctagagcatgctcgagttcaacctcaacctcgcccattgct |
5823044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 4906531 - 4906586
Alignment:
| Q |
190 |
ccacgatctgcttcctcctgcagtgccagagcatgctcaagttcaacctcaacctc |
245 |
Q |
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| T |
4906531 |
ccacaatctgcttcctcctgcagttccagagcatgctcaagttcgacctcaacctc |
4906586 |
T |
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