View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_54 (Length: 258)
Name: NF10103_low_54
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 33385307 - 33385062
Alignment:
| Q |
1 |
tagaataaccttgatctatttatttcaataaagtttgttatcattaaaagatcaatttaagatggannnnnnnnnnattatcatcaacacctcgttcatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
33385307 |
tagaataaccttgatctatttatttcaataaagtttgttatcattaaaagatcaatttaagatg-aatttttttttattatcatcaacacctcgttcatt |
33385209 |
T |
|
| Q |
101 |
agaaattgagaatctagattatttcttatctcagtagcatacaccacatccttgagaaataacnnnnnnnngggatgtgaattgcaactccacgtctcta |
200 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
33385208 |
agaaattgagaatctagattatttcttatctctggagcatacaacacatccttaagaaataacttttttttgggatgtgaattgcaactccacgtctcta |
33385109 |
T |
|
| Q |
201 |
attccaacaactttaatgatgtgcggatgtcccgacaacactttcat |
247 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
33385108 |
attccaacaactttaatgatgtgcggatgtcccaacaacattttcat |
33385062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 77 - 247
Target Start/End: Complemental strand, 33384101 - 33383931
Alignment:
| Q |
77 |
attatcatcaacacctcgttcattagaaattgagaatctagattatttcttatctcagtagcatacaccacatccttgagaaataacnnnnnnnngggat |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||||||||| ||||| |
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| T |
33384101 |
attatcatcaacacctcgttcattagaaattgagaatctagattatttcttatctctggagcatacaacacatccttaagaaataacttttttttgggat |
33384002 |
T |
|
| Q |
177 |
gtgaattgcaactccacgtctctaattccaacaactttaatgatgtgcggatgtcccgacaacactttcat |
247 |
Q |
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| T |
33384001 |
gtgaattgcaactccacgtctctaattccaacaactttaatgatgtgcggatgtcccaacaacattttcat |
33383931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 77 - 247
Target Start/End: Complemental strand, 33384668 - 33384498
Alignment:
| Q |
77 |
attatcatcaacacctcgttcattagaaattgagaatctagattatttcttatctcagtagcatacaccacatccttgagaaataacnnnnnnnngggat |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||||||||| ||||| |
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| T |
33384668 |
attatcatcaacacctcgttcattagaaattgagaatctagattatttcttatctctggagcatacaacacatccttaagaaataacttttttttgggat |
33384569 |
T |
|
| Q |
177 |
gtgaattgcaactccacgtctctaattccaacaactttaatgatgtgcggatgtcccgacaacactttcat |
247 |
Q |
| |
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| T |
33384568 |
gtgaattgcaactccacgtctctaattccaacaactttaatgatgtgtggatgtcccaacaacattttcat |
33384498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 19412253 - 19412304
Alignment:
| Q |
11 |
ttgatctatttatttcaataaagtttgttatcattaaaagatcaatttaaga |
62 |
Q |
| |
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||||||| ||||||||||| |||||||||||| |||||| |||||||||||| |
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|
| T |
19412253 |
ttgatctctttatttcaatgaagtttgttatccttaaaacatcaatttaaga |
19412304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 10014679 - 10014730
Alignment:
| Q |
11 |
ttgatctatttatttcaataaagtttgttatcattaaaagatcaatttaaga |
62 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| | ||| |||||| |
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|
| T |
10014679 |
ttgatctatttatttcaatgaagtttgttatcattaaaataccaacttaaga |
10014730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 17775376 - 17775316
Alignment:
| Q |
2 |
agaataaccttgatctatttatttcaataaagtttgttatcattaaaagatcaatttaaga |
62 |
Q |
| |
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||||||| ||||||| |||| |||||| ||||||||||||| ||||| ||||| |||||| |
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|
| T |
17775376 |
agaataatattgatctctttaattcaattaagtttgttatcagtaaaacatcaacttaaga |
17775316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 20421479 - 20421515
Alignment:
| Q |
11 |
ttgatctatttatttcaataaagtttgttatcattaa |
47 |
Q |
| |
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||||||||||||||| ||| ||||||||||||||||| |
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| T |
20421479 |
ttgatctatttatttaaatgaagtttgttatcattaa |
20421515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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