View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_55 (Length: 256)
Name: NF10103_low_55
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 33447555 - 33447782
Alignment:
| Q |
13 |
taggaagaggaaagaatggaagggatgtgtacctaaaagatatctggccaagtaatgaagaggtttcaaaggtagnnnnnnncagaaactaagctatgag |
112 |
Q |
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| T |
33447555 |
taggaagaggaaagaatggaagggatgtgtacctaaaagatatctggccaagtaatgaagaggtttcaaaggtagaaaaaaacagaaattaagctatgag |
33447654 |
T |
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| Q |
113 |
atcaatgttatattgttaatttactctgaatatcatttaataattagactttgacatgtatatttcttgttacacgcatataggctcttcaaacttatgt |
212 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33447655 |
atcaatgtaatattgttaatttactctgaatatcatttaataattagactttgacatgtatatttcttgttacacgcatataggctcttcaaacttatgt |
33447754 |
T |
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| Q |
213 |
attgcctgacatgttcaagagcatttat |
240 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
33447755 |
attgcctgacatgttcaagagcatttat |
33447782 |
T |
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