View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_57 (Length: 253)
Name: NF10103_low_57
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 21941166 - 21941393
Alignment:
| Q |
19 |
ctttcaacaatatctcgggctcaataccaaaaggaaagtcattcaaattaatggatagcagtgcatttgttggaaattcagagctatgtggagcaccatt |
118 |
Q |
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| T |
21941166 |
ctttcaacaatatctcgggttcaataccaaaaggaaagtcattcaagttaatggatagcagtgcatttgttggaaattcagagctatgtggagcaccatt |
21941265 |
T |
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| Q |
119 |
aagatcgtgttttaagtcagtaggattattaggcagcaaaaacacttggaagcttacacatattgttttactctctgtagggttgctaataatccttctg |
218 |
Q |
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| T |
21941266 |
aagatcgtgttttaagtcagtaggaatattaggcagcaaaaacacttggaagcttacacatattgttttactctctgtagggttgctaataatccttctg |
21941365 |
T |
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| Q |
219 |
gtattgggttttggaatacttcatctca |
246 |
Q |
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| T |
21941366 |
gtattgggttttggaatacttcatctca |
21941393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 10801006 - 10800783
Alignment:
| Q |
19 |
ctttcaacaatatctcgggctcaataccaaaaggaaagtcattcaaattaatggatagcagtgcatttgttggaaattcagagctatgtggagcaccatt |
118 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||| |
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| T |
10801006 |
ctttcaacaatatctcaggttcaataccaaaaggaaagtcattcaaattaatggacactagtgcatttgttggaaattcagagctatgtggagttccatt |
10800907 |
T |
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| Q |
119 |
aagatcgtgttttaagtcagtaggattattaggcagcaaaaacacttggaagcttacacatattgttttactctctgtagggttgctaataatccttctg |
218 |
Q |
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| T |
10800906 |
aagaccatgtattaagtcagtaggaatattagggagcacaaacacttggaagcttacacatattctgttactctctgtagggttgctaataatccttatg |
10800807 |
T |
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| Q |
219 |
gtattgggttttggaatacttcat |
242 |
Q |
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|||||||| ||||||||||||||| |
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| T |
10800806 |
gtattgggctttggaatacttcat |
10800783 |
T |
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