View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_59 (Length: 252)
Name: NF10103_low_59
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_59 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 47003578 - 47003315
Alignment:
| Q |
13 |
caaagggcttgaaaagaccatataatatgttacaattttacacattgaagccaacctaaacattatttctttagtatcatcaccaagagtactaaatcaa |
112 |
Q |
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| T |
47003578 |
caaagggcttgaaaagaccatataatatgttacaattttacacattgaagccaacctaaacattatttctttagtatcatcaccaagagtactaaatcaa |
47003479 |
T |
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| Q |
113 |
actcaacccattctttggatgcatacacatagcttcctacctagaaatcaagaaaagtggcca---------------------taattcccaatcctaa |
191 |
Q |
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| T |
47003478 |
actcaacccattctttggatgcatacacatagcttcctacctagaattcaagaaaagtggccataacaataatgatgataggactaattcccaatcctaa |
47003379 |
T |
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| Q |
192 |
gatacttttagcacttctcctcaac---tgaggatccattgatttgcatagatggcttaggttt |
252 |
Q |
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| T |
47003378 |
gatacttttagcacttctcctcaactgatgaggatccattgatttgcatagatggtttaggttt |
47003315 |
T |
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