View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_6 (Length: 549)
Name: NF10103_low_6
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 539
Target Start/End: Original strand, 55067497 - 55068002
Alignment:
| Q |
19 |
catacgcctccccaactcaccgcgaacatatttggcttttgatttcaacccagctatggccacttccttccctctttcatctccaaaaacagatacatac |
118 |
Q |
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| T |
55067497 |
catacgcctccctaactcaccgcgaacatatttggcttttgatttcaacccagccatggccacttccttccctctttcatctccaaaaacagatacataa |
55067596 |
T |
|
| Q |
119 |
accctagccacctagacgcagtattacatacatca---catttatgttatgaaacaaaattaataaggttagatgagaaaaatgaaaaggcaatgtggca |
215 |
Q |
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| T |
55067597 |
accctagccacctagacgcagtattacatacatcatcacagttatgttatgaaacaaaattaataagattagatgagaaaaatgaaaaggcaatgtggca |
55067696 |
T |
|
| Q |
216 |
attaaattcaggtctatgaatttaatatgataataataataacttgaatgtattctagatttcactaaataggaaaaaagaagagagtgtgtatgaacga |
315 |
Q |
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| T |
55067697 |
attaaattcaggtctatgaatttaatatga---taataataaatc-----------ag----cggtaaataggaaaaaagaagagagtatgtatgaacga |
55067778 |
T |
|
| Q |
316 |
acctgtaaatcagcggtgatttcaacgtcggtgatagtggttacggaagagagatataaatcagcacctaaggaagcttctggaagaacggcaaattgca |
415 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55067779 |
acctgtaaatcagcggtgatttcaacgtcggtaatagtggttacggaagagagatataaatcagcacctaaggaagcttctggaagaacggcaaattgca |
55067878 |
T |
|
| Q |
416 |
agacgttatcggtgatgagcatatcagaaagttctctcctaatttgtttggcaaccattttgactctccttggattagccatacactttatcgttattct |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55067879 |
agacgttatcggtgatgagcatatcagaaagttctctcctaatttgtttggcaaccattttgactctccttggattagccatacactttatcgttattct |
55067978 |
T |
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| Q |
516 |
tgaagcatttcctgtgagtctctg |
539 |
Q |
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|||||||||||||||||||||||| |
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| T |
55067979 |
tgaagcatttcctgtgagtctctg |
55068002 |
T |
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