View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_64 (Length: 250)
Name: NF10103_low_64
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_64 |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 6374461 - 6374702
Alignment:
| Q |
1 |
aactgtgctaaagatgttaacaatggtggcctgtatcacagttttgcactgaggtgaccagcctctatcataaatggtccaaatttcct-aattgattga |
99 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||| |
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| T |
6374461 |
aactgtgctaaagatgttaacaatggtggcatgtatcacagttttgcactgaggtgaccatcctctatcacaaatggtccaaatgtcctcaattgattga |
6374560 |
T |
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| Q |
100 |
aaatgcagtgtagaatcaagaatggaagcaaaccagcaccaaatcatgaaaacaaacttacatttaaagaacatgtcgaatgagttttcaacatttgata |
199 |
Q |
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| T |
6374561 |
aaatgcagtgtagaatcaagaatggaagcaaaccagcaccaaatcatgaaaacaaacttacattcaaagaacaagtggaatgagttttcaacattagata |
6374660 |
T |
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| Q |
200 |
aacaaagagagcacatagatgagatatagtatcccctttgct |
241 |
Q |
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| T |
6374661 |
aacaaagagagcacatagatgagatatagcatcccctttgct |
6374702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 16208 - 16092
Alignment:
| Q |
41 |
gttttgcactgaggtgaccagcctctatcataaatggtccaaatttcct-aattgattgaaaatgcagtgtagaatcaagaatggaagcaaaccagcacc |
139 |
Q |
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||||||||||| |||||||| | ||||||| |||||||||| ||||||| ||| ||||||||||| | || |||||||| || || | ||||||||||| |
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| T |
16208 |
gttttgcactgtggtgaccaacatctatcacaaatggtccatatttcctcaatagattgaaaatgtaaagttgaatcaaggattgaggaaaaccagcacc |
16109 |
T |
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| Q |
140 |
aaatcatgaaaacaaac |
156 |
Q |
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| T |
16108 |
aaatcatgaaagcaaac |
16092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 28716265 - 28716210
Alignment:
| Q |
115 |
tcaagaatggaagcaaaccagcaccaaatcatgaaaacaaacttacatttaaagaa |
170 |
Q |
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| T |
28716265 |
tcaagaatagaagcaaaccaacaccatatcatgaaagaaaacttacattcaaagaa |
28716210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 16489897 - 16489842
Alignment:
| Q |
115 |
tcaagaatggaagcaaaccagcaccaaatcatgaaaacaaacttacatttaaagaa |
170 |
Q |
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| T |
16489897 |
tcaagaatagaagcaaaccaacaccatatcatgaaagaaaacttacattcaaagaa |
16489842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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