View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10103_low_69 (Length: 249)

Name: NF10103_low_69
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10103_low_69
NF10103_low_69
[»] chr2 (1 HSPs)
chr2 (1-231)||(43323326-43323568)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 43323326 - 43323568
Alignment:
Q  1 atttaaatttaattatagtaatgcactaaacttaaaatagatgaatatttattattgtgatgcaactgggagcaacccgtgctaggttgaattgttctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43323326 atttaaatttaattatagtaatgcactaaacttaaaatagatgaatatttattattgtgatgcaactgggagcaacccgtgctaggttgaattgttccct 43323425  T
Q  101 tatgtaaggctcttgagaggtactgcctctagtgatgagtatgtata------------attagatttgaacacacactctgacaaacataacgctcatc 188  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||    
T  43323426 tatgtaaggctgttgagaggtactgcctccagtgatgagtatgtatatcaagtcatcccattagatttgaacacacactctgacaaacataacgctcatc 43323525  T
Q  189 cgtaagatgtagaagagcttcaaccctagtttctctctcatgt 231  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  43323526 cgtaagatgtagaagagcttcaaccctagtttctctctcatgt 43323568  T

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