View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10103_low_7 (Length: 472)
Name: NF10103_low_7
Description: NF10103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10103_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 46894164 - 46894498
Alignment:
| Q |
1 |
gcaaggcatgattggtgaatgttctttttccaaaatcaagctactacatgtactattcccagctttgcatccatcaatgtcacagagcaaatcggattct |
100 |
Q |
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| T |
46894164 |
gcaaggcatgattggtgaatgttctttttccaaaatcaagctactacatgtactattcccagctttgcatccatcaatgtcacagagcaaatcggattct |
46894263 |
T |
|
| Q |
101 |
gcctcttcttctaactcaaactgtctgagaaggctatcatcgcctagaggattcgtattgcctctaggattcatgttgcctacaatccagaacaagctta |
200 |
Q |
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| T |
46894264 |
gcctcttcttctaactcaaactgtctgagaaggctatcatcgcctagaggattcgtattgcctctaggattcatgttgcctacaatccagaacaagctta |
46894363 |
T |
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| Q |
201 |
ttttttatatggcactataataatctaaagaaacataataaactcaacgaatttataaggatcatattgnnnnnnngtttgactattgttcttaccaaat |
300 |
Q |
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| T |
46894364 |
ttttttatatggcactataataatctaaagaaacataataaactcaacgaatttataaggatcatattgtttttttgtttgactattgttcttaccaaat |
46894463 |
T |
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| Q |
301 |
cactttttgaaacatttcaataaacaaaatatttt |
335 |
Q |
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| T |
46894464 |
cactttttgaaacatttcaataaacataatatttt |
46894498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 333 - 454
Target Start/End: Original strand, 46894561 - 46894681
Alignment:
| Q |
333 |
tttcatttttcagaatcaaattaacacatcaagaaaaacaaataacaactcttgtagcaccaacacttctcaacttgtctgatgtctggcacatgtcaat |
432 |
Q |
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| T |
46894561 |
tttcatttttcagaatcaaattaacagatcaagaaaaacaaataacaacttttgtagcaccaacacttctcaacttgtctgatgtctggcacatgtcaat |
46894660 |
T |
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| Q |
433 |
gtccgacaccgatacatgtgat |
454 |
Q |
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| T |
46894661 |
gtacgaca-cgatacatgtgat |
46894681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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